micRoclean: Decontamination for low-biomass microbiome data

Set-up

About micRoclean

micRoclean contains two pipelines for decontaminating low-biomass microbiome data.

For questions on installation or usage, please submit an issue or discussion via GitHub.

To run this vignette, it is suggested to download the whole “vignettes” file folder and set working directory to file location by choosing:
Session > Set working directory > To source file location

Package loading

First, we need to load the micRoclean package as well as a few others.

# required for analysis
library(micRoclean)
library(tidyverse) # %>%

# for vignette
library(knitr) # kable
library(kableExtra) # scrollbox

Data import

Next, we are going to load our count and metadata matrix. These come from a mock dilution series from Hulspusch et al. (2023) and the original data can be found here. Users can see how counts and metadata were create through the R file here.

Counts matrix

The count matrix is A samples (n) by features (p) matrix.

The following is the count matrix for pipeline 1.

counts_1 = read.csv('counts_pipeline1.csv', row.names = 1)
counts_1 %>% kable()  %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
ASV_1 ASV_2 ASV_3 ASV_4 ASV_5 ASV_6 ASV_7 ASV_8 ASV_9 ASV_10 ASV_11 ASV_12 ASV_13 ASV_14 ASV_15 ASV_16 ASV_17 ASV_18 ASV_19 ASV_20 ASV_21 ASV_22 ASV_23 ASV_24 ASV_25 ASV_26 ASV_27 ASV_28 ASV_29 ASV_30 ASV_31 ASV_32 ASV_33 ASV_34 ASV_35 ASV_36 ASV_37 ASV_38 ASV_39 ASV_40 ASV_41 ASV_42 ASV_43 ASV_44 ASV_45 ASV_46 ASV_47 ASV_48 ASV_49 ASV_50 ASV_51 ASV_52 ASV_53 ASV_54 ASV_55 ASV_56 ASV_57 ASV_58 ASV_59 ASV_60 ASV_61 ASV_62 ASV_63 ASV_64 ASV_65 ASV_66 ASV_67 ASV_68 ASV_69 ASV_70 ASV_71 ASV_72 ASV_73 ASV_74 ASV_75 ASV_76 ASV_77 ASV_78 ASV_79 ASV_80 ASV_81 ASV_82 ASV_83 ASV_84 ASV_85 ASV_86 ASV_87 ASV_88 ASV_89 ASV_90 ASV_91 ASV_92 ASV_93 ASV_94 ASV_95 ASV_96 ASV_97 ASV_98 ASV_99 ASV_100 ASV_101 ASV_102 ASV_103 ASV_104 ASV_105 ASV_106 ASV_107 ASV_108 ASV_109 ASV_110 ASV_111 ASV_112 ASV_113 ASV_114 ASV_115 ASV_116 ASV_117 ASV_118 ASV_119 ASV_120 ASV_121 ASV_122 ASV_123 ASV_124 ASV_125 ASV_126 ASV_127 ASV_128 ASV_129 ASV_130 ASV_131 ASV_132 ASV_133 ASV_134 ASV_135 ASV_136 ASV_137 ASV_138 ASV_139 ASV_140 ASV_141 ASV_142 ASV_143 ASV_144 ASV_145 ASV_146 ASV_147 ASV_148 ASV_149 ASV_150 ASV_151 ASV_152 ASV_153 ASV_154 ASV_155 ASV_156 ASV_157 ASV_158 ASV_159 ASV_160 ASV_161 ASV_162 ASV_163 ASV_164 ASV_165 ASV_166 ASV_167 ASV_168 ASV_169 ASV_170 ASV_171 ASV_172 ASV_173 ASV_174 ASV_175 ASV_176 ASV_177 ASV_178 ASV_179 ASV_180 ASV_181 ASV_182 ASV_183 ASV_184 ASV_185 ASV_186 ASV_187 ASV_188 ASV_189 ASV_190 ASV_191 ASV_192 ASV_193 ASV_194 ASV_195 ASV_196 ASV_197 ASV_198 ASV_199 ASV_200 ASV_201 ASV_202 ASV_203 ASV_204 ASV_205 ASV_206 ASV_207 ASV_208 ASV_209 ASV_210 ASV_211 ASV_212 ASV_213 ASV_214 ASV_215 ASV_216 ASV_217 ASV_218 ASV_219 ASV_220 ASV_221 ASV_222 ASV_223 ASV_224 ASV_225 ASV_226 ASV_227 ASV_228 ASV_229 ASV_230 ASV_231 ASV_232 ASV_233 ASV_234 ASV_235 ASV_236 ASV_237 ASV_238 ASV_239 ASV_240 ASV_241 ASV_242 ASV_243 ASV_244 ASV_245 ASV_246 ASV_247 ASV_248 ASV_249 ASV_250 ASV_251 ASV_252 ASV_253 ASV_254 ASV_255 ASV_256 ASV_257 ASV_258 ASV_259 ASV_260 ASV_261 ASV_262 ASV_263 ASV_264 ASV_265 ASV_266 ASV_267 ASV_268 ASV_269 ASV_270 ASV_271 ASV_272 ASV_273 ASV_274 ASV_275 ASV_276 ASV_277 ASV_278 ASV_279 ASV_280 ASV_281 ASV_282 ASV_283 ASV_284 ASV_285 ASV_286 ASV_287 ASV_288 ASV_289 ASV_290 ASV_291 ASV_292 ASV_293 ASV_294 ASV_295 ASV_296 ASV_297 ASV_298 ASV_299 ASV_300 ASV_301 ASV_302 ASV_303 ASV_304 ASV_305 ASV_306 ASV_307 ASV_308 ASV_309 ASV_310 ASV_311 ASV_312 ASV_313 ASV_314 ASV_315 ASV_316 ASV_317 ASV_318 ASV_319 ASV_320 ASV_321 ASV_322 ASV_323 ASV_324 ASV_325 ASV_326 ASV_327 ASV_328 ASV_329 ASV_330 ASV_331 ASV_332 ASV_333 ASV_334 ASV_335 ASV_336 ASV_337 ASV_338 ASV_339 ASV_340 ASV_341 ASV_342 ASV_343 ASV_344 ASV_345 ASV_346 ASV_347 ASV_348 ASV_349 ASV_350 ASV_351 ASV_352 ASV_353 ASV_354 ASV_355 ASV_356 ASV_357 ASV_358 ASV_359 ASV_360 ASV_361 ASV_362 ASV_363 ASV_364 ASV_365 ASV_366 ASV_367 ASV_368 ASV_369 ASV_370 ASV_371 ASV_372 ASV_373 ASV_374 ASV_375 ASV_376 ASV_377 ASV_378 ASV_379 ASV_380 ASV_381 ASV_382 ASV_383 ASV_384 ASV_385 ASV_386 ASV_387 ASV_388 ASV_389 ASV_390 ASV_391 ASV_392 ASV_393 ASV_394 ASV_395 ASV_396 ASV_397 ASV_398 ASV_399 ASV_400 ASV_401 ASV_402 ASV_403 ASV_404 ASV_405 ASV_406 ASV_407 ASV_408 ASV_409 ASV_410 ASV_411 ASV_412 ASV_413 ASV_414 ASV_415 ASV_416 ASV_417 ASV_418 ASV_419 ASV_420 ASV_421 ASV_422 ASV_423 ASV_424 ASV_425 ASV_426 ASV_427 ASV_428 ASV_429 ASV_430 ASV_431 ASV_432 ASV_433 ASV_434 ASV_435 ASV_436 ASV_437 ASV_438 ASV_439 ASV_440 ASV_441 ASV_442 ASV_443 ASV_444 ASV_445 ASV_446 ASV_447 ASV_448 ASV_449 ASV_450 ASV_451 ASV_452 ASV_453 ASV_454 ASV_455 ASV_456 ASV_457 ASV_458 ASV_459 ASV_460 ASV_461 ASV_462 ASV_463 ASV_464 ASV_465 ASV_466 ASV_467 ASV_468 ASV_469 ASV_470 ASV_471 ASV_472 ASV_473 ASV_474 ASV_475 ASV_476 ASV_477 ASV_478 ASV_479 ASV_480 ASV_481 ASV_482 ASV_483 ASV_484 ASV_485 ASV_486 ASV_487 ASV_488 ASV_489 ASV_490 ASV_491 ASV_492 ASV_493 ASV_494 ASV_495 ASV_496 ASV_497 ASV_498 ASV_499 ASV_500 ASV_501 ASV_502 ASV_503 ASV_504 ASV_505 ASV_506 ASV_507 ASV_508 ASV_509 ASV_510 ASV_511 ASV_512 ASV_513 ASV_514 ASV_515 ASV_516 ASV_517 ASV_518 ASV_519 ASV_520 ASV_521 ASV_522 ASV_523 ASV_524 ASV_525 ASV_526 ASV_527 ASV_528 ASV_529 ASV_530 ASV_531 ASV_532 ASV_533 ASV_534 ASV_535 ASV_536 ASV_537 ASV_538 ASV_539 ASV_540 ASV_541 ASV_542 ASV_543 ASV_544 ASV_545 ASV_546 ASV_547 ASV_548 ASV_549 ASV_550 ASV_551 ASV_552 ASV_553 ASV_554 ASV_555 ASV_556 ASV_557 ASV_558 ASV_559 ASV_560 ASV_561 ASV_562 ASV_563 ASV_564 ASV_565 ASV_566 ASV_567 ASV_568 ASV_569 ASV_570 ASV_571 ASV_572 ASV_573 ASV_574 ASV_575 ASV_576 ASV_577 ASV_578 ASV_579 ASV_580 ASV_581 ASV_582 ASV_583 ASV_584 ASV_585 ASV_586 ASV_587 ASV_588 ASV_589 ASV_590 ASV_591 ASV_592 ASV_593 ASV_594 ASV_595 ASV_596 ASV_597 ASV_598 ASV_599 ASV_600 ASV_601 ASV_602 ASV_603 ASV_604 ASV_605 ASV_606 ASV_607 ASV_608 ASV_609 ASV_610 ASV_611 ASV_612 ASV_613 ASV_614 ASV_615 ASV_616 ASV_617 ASV_618 ASV_619 ASV_620 ASV_621 ASV_622 ASV_623 ASV_624 ASV_625 ASV_626 ASV_627 ASV_628 ASV_629 ASV_630 ASV_631 ASV_632 ASV_633 ASV_634 ASV_635 ASV_636 ASV_637 ASV_638 ASV_639 ASV_640 ASV_641 ASV_642 ASV_643 ASV_644 ASV_645 ASV_646 ASV_647 ASV_648 ASV_649 ASV_650 ASV_651 ASV_652 ASV_653 ASV_654 ASV_655 ASV_656 ASV_657 ASV_658 ASV_659 ASV_660 ASV_661 ASV_662 ASV_663 ASV_664 ASV_665 ASV_666 ASV_667 ASV_668 ASV_669 ASV_670 ASV_671 ASV_672 ASV_673 ASV_674 ASV_675 ASV_676 ASV_677 ASV_678 ASV_679 ASV_680 ASV_681 ASV_682 ASV_683 ASV_684 ASV_685 ASV_686 ASV_687 ASV_688 ASV_689 ASV_690 ASV_691 ASV_692 ASV_693 ASV_694 ASV_695 ASV_696 ASV_697 ASV_698 ASV_699 ASV_700 ASV_701 ASV_702 ASV_703 ASV_704 ASV_705 ASV_706 ASV_707 ASV_708 ASV_709 ASV_710 ASV_711 ASV_712 ASV_713 ASV_714 ASV_715 ASV_716 ASV_717 ASV_718 ASV_719 ASV_720 ASV_721 ASV_722 ASV_723 ASV_724 ASV_725 ASV_726 ASV_727 ASV_728 ASV_729 ASV_730 ASV_731 ASV_732 ASV_733 ASV_734 ASV_735 ASV_736 ASV_737 ASV_738 ASV_739 ASV_740 ASV_741 ASV_742 ASV_743 ASV_744 ASV_745 ASV_746 ASV_747 ASV_748 ASV_749 ASV_750 ASV_751 ASV_752 ASV_753 ASV_754 ASV_755 ASV_756 ASV_757 ASV_758 ASV_759 ASV_760 ASV_761 ASV_762 ASV_763 ASV_764 ASV_765 ASV_766 ASV_767 ASV_768 ASV_769 ASV_770 ASV_771 ASV_772 ASV_773 ASV_774 ASV_775 ASV_776 ASV_777 ASV_778 ASV_779 ASV_780 ASV_781 ASV_782 ASV_783 ASV_784 ASV_785 ASV_786 ASV_787 ASV_788 ASV_789 ASV_790 ASV_791 ASV_792 ASV_793 ASV_794 ASV_795 ASV_796 ASV_797 ASV_798 ASV_799 ASV_800 ASV_801 ASV_802 ASV_803 ASV_804 ASV_805 ASV_806 ASV_807 ASV_808 ASV_809 ASV_810 ASV_811 ASV_812 ASV_813 ASV_814 ASV_815 ASV_816 ASV_817 ASV_818 ASV_819 ASV_820 ASV_821 ASV_822 ASV_823 ASV_824 ASV_825 ASV_826 ASV_827 ASV_828 ASV_829 ASV_830 ASV_831 ASV_832 ASV_833 ASV_834 ASV_835 ASV_836 ASV_837 ASV_838 ASV_839 ASV_840 ASV_841 ASV_842 ASV_843 ASV_844 ASV_845 ASV_846 ASV_847 ASV_848 ASV_849 ASV_850 ASV_851 ASV_852 ASV_853 ASV_854 ASV_855 ASV_856 ASV_857 ASV_858 ASV_859 ASV_860 ASV_861 ASV_862 ASV_863 ASV_864 ASV_865 ASV_866 ASV_867 ASV_868 ASV_869 ASV_870 ASV_871 ASV_872 ASV_873 ASV_874 ASV_875 ASV_876 ASV_877 ASV_878 ASV_879 ASV_880 ASV_881 ASV_882 ASV_883 ASV_884 ASV_885 ASV_886 ASV_887 ASV_888 ASV_889 ASV_890 ASV_891 ASV_892 ASV_893 ASV_894 ASV_895 ASV_896 ASV_897 ASV_898 ASV_899 ASV_900 ASV_901 ASV_902 ASV_903 ASV_904 ASV_905 ASV_906 ASV_907 ASV_908 ASV_909 ASV_910 ASV_911 ASV_912 ASV_913 ASV_914 ASV_915 ASV_916 ASV_917 ASV_918 ASV_919 ASV_920 ASV_921 ASV_922 ASV_923 ASV_924 ASV_925 ASV_926 ASV_927 ASV_928 ASV_929 ASV_930 ASV_931 ASV_932 ASV_933 ASV_934 ASV_935 ASV_936 ASV_937 ASV_938 ASV_939 ASV_940 ASV_941 ASV_942 ASV_943 ASV_944 ASV_945 ASV_946 ASV_947 ASV_948 ASV_949 ASV_950 ASV_951 ASV_952 ASV_953 ASV_954 ASV_955 ASV_956 ASV_957 ASV_958 ASV_959 ASV_960 ASV_961 ASV_962 ASV_963 ASV_964 ASV_965 ASV_966 ASV_967 ASV_968 ASV_969 ASV_970 ASV_971 ASV_972 ASV_973 ASV_974 ASV_975 ASV_976 ASV_977 ASV_978 ASV_979 ASV_980 ASV_981 ASV_982 ASV_983 ASV_984 ASV_985 ASV_986 ASV_987 ASV_988 ASV_989 ASV_990 ASV_991 ASV_992 ASV_993 ASV_994 ASV_995 ASV_996 ASV_997 ASV_998 ASV_999 ASV_1000 ASV_1001 ASV_1002 ASV_1003 ASV_1004 ASV_1005 ASV_1006 ASV_1007 ASV_1008 ASV_1009 ASV_1010 ASV_1011 ASV_1012 ASV_1013 ASV_1014 ASV_1015 ASV_1016 ASV_1017 ASV_1018 ASV_1019 ASV_1020 ASV_1021 ASV_1022 ASV_1023 ASV_1024 ASV_1025 ASV_1026 ASV_1027 ASV_1028 ASV_1029 ASV_1030 ASV_1031 ASV_1032 ASV_1033 ASV_1034 ASV_1035 ASV_1036 ASV_1037 ASV_1038 ASV_1039 ASV_1040 ASV_1041 ASV_1042 ASV_1043 ASV_1044 ASV_1045 ASV_1046 ASV_1047 ASV_1048 ASV_1049 ASV_1050 ASV_1051 ASV_1052 ASV_1053 ASV_1054 ASV_1055 ASV_1056 ASV_1057 ASV_1058 ASV_1059 ASV_1060 ASV_1061 ASV_1062 ASV_1063 ASV_1064 ASV_1065 ASV_1066 ASV_1067 ASV_1068 ASV_1069 ASV_1070 ASV_1071 ASV_1072 ASV_1073 ASV_1074 ASV_1075 ASV_1076 ASV_1077 ASV_1078 ASV_1079 ASV_1080 ASV_1081 ASV_1082 ASV_1083 ASV_1084 ASV_1085 ASV_1086 ASV_1087 ASV_1088 ASV_1089 ASV_1090 ASV_1091 ASV_1092 ASV_1093 ASV_1094 ASV_1095 ASV_1096 ASV_1097 ASV_1098 ASV_1099 ASV_1100 ASV_1101 ASV_1102 ASV_1103 ASV_1104 ASV_1105 ASV_1106 ASV_1107 ASV_1108 ASV_1109 ASV_1110 ASV_1111 ASV_1112 ASV_1113 ASV_1114 ASV_1115 ASV_1116 ASV_1117 ASV_1118 ASV_1119 ASV_1120 ASV_1121 ASV_1122 ASV_1123 ASV_1124 ASV_1125 ASV_1126 ASV_1127 ASV_1128 ASV_1129 ASV_1130 ASV_1131 ASV_1132 ASV_1133 ASV_1134 ASV_1135 ASV_1136 ASV_1137 ASV_1138 ASV_1139 ASV_1140 ASV_1141 ASV_1142 ASV_1143 ASV_1144 ASV_1145 ASV_1146 ASV_1147 ASV_1148 ASV_1149 ASV_1150 ASV_1151 ASV_1152 ASV_1153 ASV_1154 ASV_1155 ASV_1156 ASV_1157 ASV_1158 ASV_1159 ASV_1160 ASV_1161 ASV_1162 ASV_1163 ASV_1164 ASV_1165 ASV_1166 ASV_1167 ASV_1168 ASV_1169 ASV_1170 ASV_1171 ASV_1172 ASV_1173 ASV_1174 ASV_1175 ASV_1176 ASV_1177 ASV_1178 ASV_1179 ASV_1180 ASV_1181 ASV_1182 ASV_1183 ASV_1184 ASV_1185 ASV_1186 ASV_1187 ASV_1188 ASV_1189 ASV_1190 ASV_1191 ASV_1192 ASV_1193 ASV_1194 ASV_1195 ASV_1196 ASV_1197 ASV_1198 ASV_1199 ASV_1200 ASV_1201 ASV_1202 ASV_1203 ASV_1204 ASV_1205 ASV_1206 ASV_1207 ASV_1208 ASV_1209 ASV_1210 ASV_1211 ASV_1212 ASV_1213 ASV_1214 ASV_1215 ASV_1216 ASV_1217 ASV_1218 ASV_1219 ASV_1220 ASV_1221 ASV_1222 ASV_1223 ASV_1224 ASV_1225 ASV_1226 ASV_1227 ASV_1228 ASV_1229 ASV_1230 ASV_1231 ASV_1232 ASV_1233 ASV_1234 ASV_1235 ASV_1236 ASV_1237 ASV_1238 ASV_1239 ASV_1240 ASV_1241 ASV_1242 ASV_1243 ASV_1244 ASV_1245 ASV_1246 ASV_1247 ASV_1248 ASV_1249 ASV_1250 ASV_1251 ASV_1252 ASV_1253 ASV_1254 ASV_1255 ASV_1256 ASV_1257 ASV_1258 ASV_1259 ASV_1260 ASV_1261 ASV_1262 ASV_1263 ASV_1264 ASV_1265 ASV_1266 ASV_1267 ASV_1268 ASV_1269 ASV_1270 ASV_1271 ASV_1272 ASV_1273 ASV_1274 ASV_1275 ASV_1276 ASV_1277 ASV_1278 ASV_1279 ASV_1280 ASV_1281 ASV_1282 ASV_1283 ASV_1284 ASV_1285 ASV_1286 ASV_1287 ASV_1288 ASV_1289 ASV_1290 ASV_1291 ASV_1292 ASV_1293 ASV_1294 ASV_1295 ASV_1296 ASV_1297 ASV_1298 ASV_1299 ASV_1300 ASV_1301 ASV_1302 ASV_1303 ASV_1304 ASV_1305 ASV_1306 ASV_1307 ASV_1308 ASV_1309 ASV_1310 ASV_1311 ASV_1312 ASV_1313 ASV_1314 ASV_1315 ASV_1316 ASV_1317 ASV_1318 ASV_1319 ASV_1320 ASV_1321 ASV_1322 ASV_1323 ASV_1324 ASV_1325 ASV_1326 ASV_1327 ASV_1328 ASV_1329 ASV_1330 ASV_1331 ASV_1332 ASV_1333 ASV_1334 ASV_1335 ASV_1336 ASV_1337 ASV_1338 ASV_1339 ASV_1340 ASV_1341 ASV_1342 ASV_1343 ASV_1344 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D7 5071 3807 2243 3527 1036 1418 587 0 1410 477 0 537 672 0 0 338 0 0 193 0 467 147 0 168 453 0 169 0 83 657 0 0 0 479 416 0 447 0 0 0 0 0 0 220 0 158 0 0 436 157 328 0 0 0 119 0 0 0 0 0 120 0 191 0 280 0 0 0 158 0 0 0 115 0 28 0 186 257 0 0 0 0 0 157 0 0 124 0 181 0 0 108 187 0 119 117 0 105 0 217 0 0 0 137 0 0 154 0 89 0 278 288 0 0 0 0 0 0 0 95 0 0 105 0 0 0 0 205 224 0 0 0 266 0 0 0 133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 207 126 0 0 0 0 0 0 0 0 0 0 146 64 0 205 0 0 0 0 44 0 0 0 0 0 0 0 0 161 0 0 0 0 57 84 0 0 0 25 0 0 0 0 0 163 0 0 37 0 0 0 177 0 129 0 0 0 0 301 0 172 0 0 0 0 0 0 0 218 0 0 0 0 164 0 0 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102 0 0 250 0 221 0 0 0 0 112 90 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212 0 0 209 0 0 0 0 205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193 0 0 76 192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181 181 0 180 0 0 0 0 177 177 0 0 0 0 0 0 0 0 173 0 172 0 0 0 0 0 0 0 0 0 0 168 0 0 11 0 0 166 0 0 0 0 164 0 0 0 0 0 0 0 0 0 0 0 0 0 136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 147 0 0 0 145 0 0 0 143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135 0 0 0 0 0 0 133 0 0 0 0 0 0 0 0 0 0 130 0 0 0 0 0 0 0 81 0 0 0 0 0 0 0 126 0 0 0 0 0 0 0 0 124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111 0 0 110 110 0 0 0 0 109 109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 0 0 0 0 0 0 0 104 0 0 0 0 0 0 0 0 102 0 0 0 0 0 0 0 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 0 0 0 0 0 0 0 0 92 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 0 0 81 0 0 0 0 0 0 0 59 0 0 0 0 0 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0 0 0 0 0 0 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 49 49 0 0 0 0 0 0 0 0 0 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 0 0 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D8 1308 1578 861 1966 319 937 626 0 1672 564 120 145 1180 315 95 274 652 0 151 355 1330 0 0 104 0 0 0 0 0 129 0 65 155 153 0 0 353 136 0 0 145 0 0 475 201 273 96 279 465 290 637 151 0 0 692 0 0 365 373 254 517 327 112 291 172 0 77 0 293 0 0 0 0 0 0 224 99 0 391 0 104 0 0 0 0 186 62 0 0 121 426 101 166 0 0 0 181 0 0 77 78 0 0 0 0 0 113 0 0 273 310 214 0 0 0 0 0 0 0 0 0 0 0 0 243 0 138 161 0 171 0 0 0 0 394 0 0 0 0 134 0 112 244 0 210 0 340 0 204 0 0 298 0 0 0 80 0 0 0 0 0 0 144 344 0 0 0 0 251 0 0 0 0 0 301 0 0 213 0 0 99 0 0 0 0 0 267 0 0 0 0 0 0 0 0 96 69 159 0 0 0 0 0 0 0 0 0 120 0 0 0 0 59 51 0 0 158 0 176 0 82 82 0 0 0 132 0 0 146 0 0 0 0 0 0 0 0 0 0 0 76 0 262 0 116 0 0 0 0 0 0 0 0 0 0 132 0 0 0 0 0 0 0 0 0 0 0 141 99 0 58 237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0 0 119 0 0 131 0 0 0 0 0 0 0 0 0 193 0 0 0 192 0 0 0 191 0 0 0 0 8 187 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175 175 0 0 0 59 0 0 137 0 0 0 171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162 162 0 0 0 0 0 0 0 0 157 0 156 0 0 155 0 153 153 153 0 0 0 0 0 0 0 0 0 0 0 148 0 0 0 0 0 0 0 0 0 0 0 0 142 0 0 139 138 0 0 0 137 137 0 136 136 0 0 135 0 108 134 0 0 0 133 0 0 0 0 0 0 131 0 0 0 0 42 0 129 0 0 0 0 0 127 0 0 0 0 0 0 0 0 0 125 0 0 0 0 0 124 0 0 0 0 0 0 0 0 0 0 0 0 121 0 120 0 0 0 0 0 118 0 0 0 0 0 116 0 0 0 0 115 0 0 114 114 114 0 0 0 0 0 0 0 0 0 0 0 0 0 112 0 0 0 0 0 0 0 110 110 110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 99 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94 0 0 0 0 0 0 93 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 0 0 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 0 0 0 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0 0 0 0 0 0 0 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 0 0 0 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

The following is the counts matrix for pipeline 2.

counts_2 = read.csv('counts_pipeline2.csv', row.names = 1)
counts_2 %>% kable() %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.1 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.2 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.3 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.4 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.5 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.6 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacteriaceae_unclassified_Methanobacteriaceae_unclassified Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.1 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.2 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.3 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.4 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.5 Archaea_Thaumarchaeota_Marine.Group.I_Unknown.Order_Unknown.Family_Candidatus.Nitrosoarchaeum_Candidatus.Nitrosoarchaeum_unclassified Archaea_Thaumarchaeota_South.African.Gold.Mine.Gp.1.SAGMCG.1._Unknown.Order_Unknown.Family_Candidatus.Nitrosotalea_Candidatus.Nitrosotalea_unclassified Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.1 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.2 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.3 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.4 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.5 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.6 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.7 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.8 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.9 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.10 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.1 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.2 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.3 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.4 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.5 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.6 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.7 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.8 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.9 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.10 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.11 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.12 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.13 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.14 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.15 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.16 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.17 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.18 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.19 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.20 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.21 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.22 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.23 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.24 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.25 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.26 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.27 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.28 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.29 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.30 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.31 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.32 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.33 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.34 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.35 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.36 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.37 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.38 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.39 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.1 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.2 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.1 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.2 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.3 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.4 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.5 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.6 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.7 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.8 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.9 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.10 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.11 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.12 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.13 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Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.22 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.3 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.4 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.5 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.1 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.13 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.14 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.15 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.9 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.10 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.19 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.20 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.21 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.22 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.23 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.24 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.25 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.26 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.27 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.28 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.29 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.30 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.31 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.32 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.33 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.34 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.35 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.36 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.37 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.38 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.39 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.40 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.41 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.42 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.43 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.44 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.45 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.46 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.47 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.48 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.49 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.50 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.51 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.52 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.53 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.54 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Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.2 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.3 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.4 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.5 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.6 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.7 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Campylobacteraceae_Arcobacter_Arcobacter_unclassified.8 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Helicobacteraceae_Helicobacteraceae_unclassified_Helicobacteraceae_unclassified Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Helicobacteraceae_Sulfuricurvum_Sulfuricurvum_unclassified Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Helicobacteraceae_Sulfuricurvum_Sulfuricurvum_unclassified.1 Bacteria_Proteobacteria_Epsilonproteobacteria_Campylobacterales_Helicobacteraceae_Sulfuricurvum_Sulfuricurvum_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales_unclassified_Xanthomonadales_unclassified_Xanthomonadales_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales.Incertae.Sedis_Xanthomonadales.Incertae.Sedis_unclassified_Xanthomonadales.Incertae.Sedis_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales.Incertae.Sedis_Xanthomonadales.Incertae.Sedis_unclassified_Xanthomonadales.Incertae.Sedis_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales.Incertae.Sedis_Xanthomonadales.Incertae.Sedis_unclassified_Xanthomonadales.Incertae.Sedis_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales.Incertae.Sedis_Xanthomonadales.Incertae.Sedis_unclassified_Xanthomonadales.Incertae.Sedis_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadales.Incertae.Sedis_Steroidobacter_Steroidobacter_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Dokdonella_Dokdonella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Xanthomonadaceae_unclassified_Xanthomonadaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Rhodanobacter_Rhodanobacter_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Xanthomonadaceae_unclassified_Xanthomonadaceae_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Stenotrophomonas_Stenotrophomonas.maltophilia Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Stenotrophomonas_Stenotrophomonas.maltophilia.1 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Arenimonas_Arenimonas_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Arenimonas_Arenimonas_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Arenimonas_Arenimonas_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Arenimonas_Arenimonas_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Arenimonas_Arenimonas_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Thermomonas_Thermomonas_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Thermomonas_Thermomonas_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.8 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.9 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.10 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonas_Comamonas_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.11 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.12 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Hydrogenophaga_Hydrogenophaga_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Hydrogenophaga_Hydrogenophaga_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Hydrogenophaga_Hydrogenophaga_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Hydrogenophaga_Hydrogenophaga_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Hydrogenophaga_Hydrogenophaga_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.13 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.14 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.15 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.16 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.17 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.18 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.19 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.20 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.21 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.22 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.23 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.24 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.25 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.26 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.27 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.28 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.29 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.30 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.31 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Limnohabitans_Limnohabitans_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Polaromonas_Polaromonas_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Rhizobacter_Rhizobacter_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.32 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.33 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.34 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Albidiferax_Albidiferax_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.35 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Albidiferax_Albidiferax_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.36 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.37 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.38 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.39 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Albidiferax_Albidiferax_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.40 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.41 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.42 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.43 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.44 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.45 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.46 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.47 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.48 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Limnohabitans_Limnohabitans_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.49 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.50 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.51 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.52 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.53 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Albidiferax_Albidiferax_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.54 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_Alcaligenaceae_unclassified_Alcaligenaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiales_unclassified_Burkholderiales_unclassified_Burkholderiales_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Uliginosibacterium_Uliginosibacterium_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Uliginosibacterium_Uliginosibacterium_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Nitrosomonadales_Gallionellaceae_Gallionellaceae_unclassified_Gallionellaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Nitrosomonadales_Gallionellaceae_Gallionellaceae_unclassified_Gallionellaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Nitrosomonadales_Gallionellaceae_Sideroxydans_Sideroxydans_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Nitrosomonadales_Gallionellaceae_Sideroxydans_Sideroxydans_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Rhodocyclaceae_unclassified_Rhodocyclaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_12up_12up_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Candidatus.Accumulibacter_Candidatus.Accumulibacter_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_TRA3.20_TRA3.20_unclassified_TRA3.20_unclassified_TRA3.20_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_Alcaligenaceae_unclassified_Alcaligenaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_Alcaligenaceae_unclassified_Alcaligenaceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.8 Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales_Neisseriaceae_Neisseriaceae_unclassified_Neisseriaceae_unclassified.9 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia_Burkholderia_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia_Burkholderia_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Polynucleobacter_Polynucleobacter_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Polynucleobacter_Polynucleobacter_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Ralstonia_Ralstonia_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Ralstonia_Ralstonia_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Burkholderiaceae_Cupriavidus_Cupriavidus_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Undibacterium_Undibacterium_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Undibacterium_Undibacterium_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.8 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.9 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.10 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.11 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.12 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.13 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.14 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.15 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Massilia_Massilia_unclassified.16 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Oxalobacteraceae_Oxalobacteraceae_unclassified_Oxalobacteraceae_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_GKS98.freshwater.group_GKS98.freshwater.group_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_GKS98.freshwater.group_GKS98.freshwater.group_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Alcaligenaceae_Castellaniella_Castellaniella_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Hydrogenophilales_Hydrogenophilaceae_Hydrogenophilaceae_unclassified_Hydrogenophilaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilus_Methylophilus_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_SC.I.84_SC.I.84_unclassified_SC.I.84_unclassified_SC.I.84_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_LD28.freshwater.group_LD28.freshwater.group_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.5 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_B1.7BS_B1.7BS_unclassified_B1.7BS_unclassified_B1.7BS_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Nitrosomonadales_Nitrosomonadaceae_Nitrosomonadaceae_unclassified_Nitrosomonadaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Aquabacterium_Aquabacterium_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Aquabacterium_Aquabacterium_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.55 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.56 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.57 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.58 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Aquabacterium_Aquabacterium_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.59 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Rhizobacter_Rhizobacter_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.60 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.61 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.62 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonadaceae_unclassified_Comamonadaceae_unclassified.63 Bacteria_Proteobacteria_Betaproteobacteria_Burkholderiales_Comamonadaceae_Comamonas_Comamonas_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_SC.I.84_SC.I.84_unclassified_SC.I.84_unclassified_SC.I.84_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_C1.B045_C1.B045_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas.aeruginosa Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas.fluorescens Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas.fluorescens.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas.fluorescens.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas.fluorescens.3 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.8 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Pseudomonas_Pseudomonas_unclassified.9 Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_Alteromonadaceae_unclassified_Alteromonadaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_OM60.NOR5..clade_OM60.NOR5..clade_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_Halioglobus_Halioglobus_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Oceanospirillaceae_Marinospirillum_Marinospirillum_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Oceanospirillaceae_Marinospirillum_Marinospirillum_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Alcanivoracaceae_Alcanivorax_Alcanivorax_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Escherichia.Shigella_Escherichia.Shigella_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Enterobacteriaceae_unclassified_Enterobacteriaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Serratia_Serratia_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Enterobacteriaceae_unclassified_Enterobacteriaceae_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Aeromonadales_Aeromonadaceae_Aeromonadaceae_unclassified_Aeromonadaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Aeromonadales_Aeromonadaceae_Aeromonas_Aeromonas_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter.calcoaceticus Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.8 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.9 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.10 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.11 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter.baumannii Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.12 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Acinetobacter_Acinetobacter_unclassified.13 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Alkanindiges_Alkanindiges_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Alkanindiges_Alkanindiges_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Alkanindiges_Alkanindiges_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Thiotrichales_Thiotrichaceae_Beggiatoa_Beggiatoa_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Cellvibrio_Cellvibrio_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Cellvibrio_Cellvibrio_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Methylococcales_pLW.20_pLW.20_unclassified_pLW.20_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Methylococcales_pLW.20_pLW.20_unclassified_pLW.20_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Methylococcales_CABC2E06_CABC2E06_unclassified_CABC2E06_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Thiotrichales_Thiotrichaceae_Thiothrix_Thiothrix_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.1 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.2 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.20 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.2 Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_BD1.7.clade_BD1.7.clade_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Chromatiales_Ectothiorhodospiraceae_Acidiferrobacter_Acidiferrobacter_unclassified Bacteria_Proteobacteria_SPOTSOCT00m83_SPOTSOCT00m83_unclassified_SPOTSOCT00m83_unclassified_SPOTSOCT00m83_unclassified_SPOTSOCT00m83_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.8 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.9 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.10 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.11 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.12 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.13 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.3 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.8 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.9 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.10 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.11 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.14 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Coxiella_Coxiella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.3 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Acetobacteraceae_Acetobacteraceae_unclassified_Acetobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Acetobacteraceae_Acetobacteraceae_unclassified_Acetobacteraceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillales.Incertae.Sedis_Reyranella_Reyranella_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsiaceae_unclassified_Rickettsiaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Defluviella_Candidatus.Defluviella_unclassified Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.40 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.41 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.42 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.43 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.44 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.45 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.46 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.47 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.48 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.49 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.50 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.51 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.52 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.53 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.54 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.55 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.56 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.57 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.58 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.59 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Hepatincola_Candidatus.Hepatincola.porcellionum Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Thalassospira_Thalassospira_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Odyssella_Candidatus.Odyssella_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Captivus_Candidatus.Captivus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_AKIW1012_AKIW1012_unclassified_AKIW1012_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_LWSR.14_LWSR.14_unclassified_LWSR.14_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.6 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingopyxis_Sphingopyxis_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Altererythrobacter_Altererythrobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Altererythrobacter_Altererythrobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Altererythrobacter_Altererythrobacter_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Altererythrobacter_Altererythrobacter_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Erythrobacteraceae_unclassified_Erythrobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Erythrobacteraceae_unclassified_Erythrobacteraceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Porphyrobacter_Porphyrobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Porphyrobacter_Porphyrobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.8 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.9 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.10 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.6 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.8 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.9 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.10 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.11 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.12 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.13 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.14 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.15 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.11 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.16 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.17 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.18 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.19 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.20 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.21 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.22 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.23 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.24 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.25 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_Novosphingobium_unclassified.26 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.12 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_SM2D12_SM2D12_unclassified_SM2D12_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_SM2D12_SM2D12_unclassified_SM2D12_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingopyxis_Sphingopyxis_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.13 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadales_unclassified_Sphingomonadales_unclassified_Sphingomonadales_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingobium_Sphingobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingobium_Sphingobium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.6 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.8 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.9 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.10 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.11 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.12 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.13 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.14 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.15 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.16 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonas_Sphingomonas_unclassified.17 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sandarakinorhabdus_Sandarakinorhabdus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sandarakinorhabdus_Sandarakinorhabdus_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sandarakinorhabdus_Sandarakinorhabdus_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadales_unclassified_Sphingomonadales_unclassified_Sphingomonadales_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.14 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.15 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.16 Bacteria_Proteobacteria_Alphaproteobacteria_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_A0839_A0839_unclassified_A0839_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales.Incertae.Sedis_Rhizomicrobium_Rhizomicrobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas_unclassified.6 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Brevundimonas_Brevundimonas.diminuta Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Phenylobacterium_Phenylobacterium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacteraceae_unclassified_Caulobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacteraceae_unclassified_Caulobacteraceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Asticcacaulis_Asticcacaulis_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_Hyphomicrobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobiaceae_unclassified_Hyphomicrobiaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_Hyphomicrobium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_Hyphomicrobium_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_JG35.K1.AG5_JG35.K1.AG5_unclassified_JG35.K1.AG5_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_MNG7_MNG7_unclassified_MNG7_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_MNG7_MNG7_unclassified_MNG7_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Devosia_Devosia_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Devosia_Devosia_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Devosia_Devosia_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_BCf3.20_BCf3.20_unclassified_BCf3.20_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Rhizobiaceae_unclassified_Rhizobiaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Rhizobium_Rhizobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Rhizobium_Rhizobium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Rhizobiaceae_unclassified_Rhizobiaceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Rhizobium_Rhizobium_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Aurantimonadaceae_Aurantimonadaceae_unclassified_Aurantimonadaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_alphaI.cluster_alphaI.cluster_unclassified_alphaI.cluster_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_alphaI.cluster_alphaI.cluster_unclassified_alphaI.cluster_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudolabrys_Pseudolabrys_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Xanthobacteraceae_unclassified_Xanthobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Bradyrhizobiaceae_Bradyrhizobiaceae_unclassified_Bradyrhizobiaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Bradyrhizobiaceae_Bradyrhizobium_Bradyrhizobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Bradyrhizobiaceae_Bradyrhizobium_Bradyrhizobium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_F0723_F0723_unclassified_F0723_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_F0723_F0723_unclassified_F0723_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Bradyrhizobiaceae_Bosea_Bosea_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Methylobacteriaceae_Methylobacterium_Methylobacterium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Methylobacteriaceae_Methylobacterium_Methylobacterium_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Methylobacteriaceae_Methylobacterium_Methylobacterium_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Methylobacteriaceae_Methylobacterium_Methylobacterium_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Methylobacteriaceae_Methylobacterium_Methylobacterium_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacteraceae_unclassified_Rhodobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacteraceae_unclassified_Rhodobacteraceae_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacteraceae_unclassified_Rhodobacteraceae_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.6 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Paracoccus_Paracoccus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_Hirschia_Hirschia_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_Hyphomonadaceae_unclassified_Hyphomonadaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Defluviicoccus_Defluviicoccus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified.3 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.1 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.5 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.6 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.7 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.8 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.9 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.10 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.11 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.12 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.13 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.14 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.15 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.16 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.5 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.6 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio.bacteriovorus Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio.bacteriovorus.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.7 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.8 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.9 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.10 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.11 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Chlamydiales_unclassified_Chlamydiales_unclassified_Chlamydiales_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified.2 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.1 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Sandaracinaceae_Sandaracinaceae_unclassified_Sandaracinaceae_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Sandaracinaceae_Sandaracinaceae_unclassified_Sandaracinaceae_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Sandaracinaceae_Sandaracinaceae_unclassified_Sandaracinaceae_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.5 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_mle1.27_mle1.27_unclassified_mle1.27_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Haliangiaceae_Haliangium_Haliangium_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Haliangiaceae_Haliangium_Haliangium_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Haliangiaceae_Haliangium_Haliangium_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.17 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.18 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.19 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.20 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.21 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.22 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_bacterium.Shr3_bacterium.Shr3_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_bacterium.Shr3_bacterium.Shr3_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_bacterium.Shr3_bacterium.Shr3_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.23 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.24 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.25 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.26 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.27 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.28 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.29 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Bacteriovorax_Bacteriovorax_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Bacteriovorax_Bacteriovorax_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.3 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.3 Bacteria_Deinococcus.Thermus_Deinococci_Thermales_Thermaceae_Meiothermus_Meiothermus_unclassified Bacteria_Deinococcus.Thermus_Deinococci_Thermales_Thermaceae_Thermus_Thermus_unclassified Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified.1 Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified.2 Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified.3 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.60 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.1 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.2 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.3 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.4 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.5 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.6 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.7 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Simkaniaceae_unclassified_Simkaniaceae_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Parachlamydiaceae_Candidatus.Protochlamydia_Protochlamydia.naegleriophila Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia.porcellionis Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.1 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Simkaniaceae_unclassified_Simkaniaceae_unclassified.1 Bacteria_Spirochaetae_Spirochaetes_W5_W5_unclassified_W5_unclassified_W5_unclassified Bacteria_Spirochaetae_Spirochaetes_W27_W27_unclassified_W27_unclassified_W27_unclassified Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.61 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophaga_Cytophaga_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophaga_Cytophaga_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_MWH.CFBk5_MWH.CFBk5_unclassified_MWH.CFBk5_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophaga_Cytophaga_unclassified.2 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Dyadobacter_Dyadobacter_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Dyadobacter_Dyadobacter_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Dyadobacter_Dyadobacter_unclassified.2 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.2 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.3 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.4 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.5 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Pseudarcicella_Pseudarcicella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.2 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.3 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.4 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.5 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.6 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Leadbetterella_Leadbetterella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Leadbetterella_Leadbetterella_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Leadbetterella_Leadbetterella_unclassified.2 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Emticicia_Emticicia_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Emticicia_Emticicia_unclassified.1 Bacteria_Bacteroidetes_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified Bacteria_Bacteroidetes_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.7 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagales_unclassified_Cytophagales_unclassified_Cytophagales_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.11 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.12 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.13 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophaga_Chitinophaga_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophaga_Chitinophaga_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophaga_Chitinophaga.arvensicola Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Segetibacter_Segetibacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Niastella_Niastella_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.14 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.15 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Terrimonas_Terrimonas_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Terrimonas_Terrimonas_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Terrimonas_Terrimonas_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.16 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.17 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Sediminibacterium_Sediminibacterium_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Sediminibacterium_Sediminibacterium_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Sediminibacterium_Sediminibacterium_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Sediminibacterium_Sediminibacterium_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Sediminibacterium_Sediminibacterium_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.19 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Taibaiella_Taibaiella_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.20 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.21 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.22 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.23 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Ferruginibacter_Ferruginibacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Ferruginibacter_Ferruginibacter_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Ferruginibacter_Ferruginibacter_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.24 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophaga_Chitinophaga_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Filimonas_Filimonas_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Filimonas_Filimonas_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Filimonas_Filimonas_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Candidatus.Aquirestis_Candidatus.Aquirestis_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.11 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.12 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.13 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.14 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.15 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.16 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.17 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.19 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.1 Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified.1 Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.2 Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified.4 Bacteria_Bacteroidetes_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified.2 Bacteria_Bacteroidetes_SB.5_SB.5_unclassified_SB.5_unclassified_SB.5_unclassified_SB.5_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Solitalea_Solitalea_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Solitalea_Solitalea_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Solitalea_Solitalea_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.3 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophaga_Cytophaga_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.4 Bacteria_Bacteroidetes_SB.1_SB.1_unclassified_SB.1_unclassified_SB.1_unclassified_SB.1_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_PHOS.HE51_PHOS.HE51_unclassified_PHOS.HE51_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.5 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Rikenellaceae_vadinBC27.wastewater.sludge.group_vadinBC27.wastewater.sludge.group_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.11 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.12 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.13 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.14 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.15 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.16 Bacteria_Bacteroidetes_WCHB1.32_WCHB1.32_unclassified_WCHB1.32_unclassified_WCHB1.32_unclassified_WCHB1.32_unclassified Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.1 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.2 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.3 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Prevotellaceae_Prevotella_Prevotella_unclassified Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.2 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.3 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.4 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.5 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.6 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.7 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.17 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.9 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_NS9.marine.group_NS9.marine.group_unclassified_NS9.marine.group_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_NS9.marine.group_NS9.marine.group_unclassified_NS9.marine.group_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_NS9.marine.group_NS9.marine.group_unclassified_NS9.marine.group_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_AKYH767_AKYH767_unclassified_AKYH767_unclassified Bacteria_Bacteroidetes_VC2.1.Bac22_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_AKYH767_AKYH767_unclassified_AKYH767_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_AKYH767_AKYH767_unclassified_AKYH767_unclassified.2 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.2 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.3 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.4 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.5 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.6 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.7 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.8 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.9 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.10 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.11 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.12 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.13 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.14 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.15 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.16 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.17 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.18 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.19 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.20 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.21 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.22 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.23 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.24 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.25 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.26 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.27 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.28 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.29 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.30 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.31 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.32 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.33 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.34 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.35 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.36 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.37 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.38 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.39 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.40 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.41 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.42 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.43 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.44 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.45 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.46 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.47 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.48 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.49 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.50 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.51 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.52 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.53 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.54 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_Flavobacterium_unclassified.55 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.2 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.3 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.4 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.5 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.6 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Epilithonimonas_Epilithonimonas_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Epilithonimonas_Epilithonimonas_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Chryseobacterium_Chryseobacterium_unclassified.7 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Cloacibacterium_Cloacibacterium_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Elizabethkingia_Elizabethkingia.meningoseptica Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Weeksella_Weeksella_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Empedobacter_Empedobacter_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Weeksella_Weeksella_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Sufflavibacter_Sufflavibacter_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.2 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.3 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.4 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.5 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Rikenellaceae_vadinBC27.wastewater.sludge.group_vadinBC27.wastewater.sludge.group_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium.spiritivorum Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.11 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.12 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.13 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.14 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.15 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.16 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Pedobacter_Pedobacter_unclassified.17 Bacteria_Chlorobi_Chlorobia_Chlorobiales_OPB56_OPB56_unclassified_OPB56_unclassified Bacteria_Chlorobi_Chlorobia_Chlorobiales_OPB56_OPB56_unclassified_OPB56_unclassified.1 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.62 Bacteria_Fibrobacteres_Fibrobacteria_Fibrobacterales_Fibrobacteraceae_Fibrobacteraceae_unclassified_Fibrobacteraceae_unclassified Bacteria_Gemmatimonadetes_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadaceae_Gemmatimonadaceae_unclassified_Gemmatimonadaceae_unclassified Bacteria_Gemmatimonadetes_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadaceae_Gemmatimonas_Gemmatimonas_unclassified Bacteria_Nitrospirae_Nitrospira_Nitrospirales_4.29_4.29_unclassified_4.29_unclassified Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.1 Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.2 Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.3 Bacteria_NPL.UPA2_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified Bacteria_NPL.UPA2_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified.1 Bacteria_Spirochaetae_Spirochaetes_Spirochaetales_Spirochaetaceae_Spirochaeta_Spirochaeta_unclassified Bacteria_Spirochaetae_Spirochaetes_Spirochaetales_Spirochaetaceae_Spirochaeta_Spirochaetes.bacterium.pACH87 Bacteria_Spirochaetae_Spirochaetes_Spirochaetales_Leptospiraceae_Leptospiraceae_unclassified_Leptospiraceae_unclassified Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.4 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.4 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.30 Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.6 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.5 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified.2 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified.3 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Simkaniaceae_unclassified_Simkaniaceae_unclassified.2 Bacteria_Acidobacteria_Acidobacteria_Subgroup.4_Unknown.Family_Blastocatella_Blastocatella_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.4_Unknown.Family_Blastocatella_Blastocatella_unclassified.1 Bacteria_Acidobacteria_Acidobacteria_Subgroup.4_11.24_11.24_unclassified_11.24_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_Unknown.Family_Bryobacter_Bryobacter_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_Unknown.Family_Bryobacter_Bryobacter_unclassified.1 Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_Unknown.Family_Bryobacter_Bryobacter_unclassified.2 Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_SJA.149_SJA.149_unclassified_SJA.149_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.1 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.2 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.3 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.4 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.5 Bacteria_Acidobacteria_Acidobacteria_Subgroup.17_Subgroup.17_unclassified_Subgroup.17_unclassified_Subgroup.17_unclassified Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.4 Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIb_Lineage.IIb_unclassified_Lineage.IIb_unclassified_Lineage.IIb_unclassified Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIb_Lineage.IIb_unclassified_Lineage.IIb_unclassified_Lineage.IIb_unclassified.1 Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIa_Lineage.IIa_unclassified_Lineage.IIa_unclassified_Lineage.IIa_unclassified Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIa_Lineage.IIa_unclassified_Lineage.IIa_unclassified_Lineage.IIa_unclassified.1 Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIa_Lineage.IIa_unclassified_Lineage.IIa_unclassified_Lineage.IIa_unclassified.2 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.2 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiaceae_CL500.29.marine.group_CL500.29.marine.group_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiaceae_Acidimicrobiaceae_unclassified_Acidimicrobiaceae_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiaceae_Acidimicrobiaceae_unclassified_Acidimicrobiaceae_unclassified.1 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales.Incertae.Sedis_Candidatus.Microthrix_Candidatus.Microthrix_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Iamiaceae_Iamia_Iamia_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.1 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.2 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.3 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.4 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.5 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthya_Sporichthya_unclassified Bacteria_Actinobacteria_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_Streptomyces_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Geodermatophilaceae_Geodermatophilaceae_unclassified_Geodermatophilaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Kineosporiales_Kineosporiaceae_Quadrisphaera_Quadrisphaera_unclassified Bacteria_Actinobacteria_Actinobacteria_Bifidobacteriales_Bifidobacteriaceae_Bifidobacterium_Bifidobacterium_unclassified Bacteria_Actinobacteria_Actinobacteria_Bifidobacteriales_Bifidobacteriaceae_Bifidobacterium_Bifidobacterium_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Micrococcaceae_Arthrobacter_Arthrobacter_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Planktoluna_Candidatus.Planktoluna_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Aquiluna_Candidatus.Aquiluna_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Aquiluna_Candidatus.Aquiluna_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Aquiluna_Candidatus.Aquiluna_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Planktoluna_Candidatus.Planktoluna_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.3 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.4 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_Lysinimonas_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_Lysinimonas_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_Lysinimonas_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_Lysinimonas_unclassified.3 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.5 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Alpinimonas_Alpinimonas_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Alpinimonas_Alpinimonas_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Alpinimonas_Alpinimonas_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.6 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.7 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Leucobacter_Leucobacter_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Sanguibacteraceae_Sanguibacter_Sanguibacter_unclassified Bacteria_Actinobacteria_Actinobacteria_Corynebacteriales_Nocardiaceae_Rhodococcus_Rhodococcus.erythropolis Bacteria_Actinobacteria_Actinobacteria_Corynebacteriales_Corynebacteriaceae_Corynebacterium_Corynebacterium_unclassified Bacteria_Actinobacteria_Actinobacteria_Micromonosporales_Micromonosporaceae_Micromonosporaceae_unclassified_Micromonosporaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_Actinoplanes_unclassified Bacteria_Actinobacteria_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_Actinoplanes_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Propionibacteriales_Nocardioidaceae_Aeromicrobium_Aeromicrobium_unclassified Bacteria_Actinobacteria_Actinobacteria_Propionibacteriales_Nocardioidaceae_Aeromicrobium_Aeromicrobium_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Cryptosporangiaceae_Fodinicola_Fodinicola_unclassified Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.3 Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.4 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.3 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.4 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.5 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.6 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.7 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Candidatus.Planktophila_Candidatus.Planktophila_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.8 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified.3 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.9 Bacteria_Actinobacteria_Thermoleophilia_Gaiellales_Gaiellaceae_Gaiella_Gaiella_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_TM146_TM146_unclassified_TM146_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_Patulibacteraceae_Patulibacter_Patulibacter_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_Patulibacteraceae_Patulibacter_Patulibacter_unclassified.1 Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_480.2_480.2_unclassified_480.2_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_480.2_480.2_unclassified_480.2_unclassified.1 Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_480.2_480.2_unclassified_480.2_unclassified.2 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.21 Bacteria_Armatimonadetes_Armatimonadia_Armatimonadales_Armatimonadaceae_Armatimonas_Armatimonas_unclassified Bacteria_Armatimonadetes_Armatimonadia_Armatimonadales_Armatimonadaceae_Armatimonas_Armatimonas_unclassified.1 Bacteria_Armatimonadetes_Armatimonadetes_unclassified_Armatimonadetes_unclassified_Armatimonadetes_unclassified_Armatimonadetes_unclassified_Armatimonadetes_unclassified Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.22 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.23 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.24 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.25 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.63 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.26 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.64 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Rhodopirellula_Rhodopirellula_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Rhodopirellula_Rhodopirellula_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.3 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.4 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.6 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.7 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.8 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.9 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.10 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pir4.lineage_Pir4.lineage_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.3 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.4 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Schlesneria_Schlesneria_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.3 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.4 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.6 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.7 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.8 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.9 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.10 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.11 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.12 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified.3 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified.4 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Singulisphaera_Singulisphaera_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.6 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Singulisphaera_Singulisphaera_unclassified.1 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Singulisphaera_Singulisphaera_unclassified.2 Bacteria_Planctomycetes_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_SM1A02_SM1A02_unclassified Bacteria_Planctomycetes_Phycisphaerae_WD2101.soil.group_WD2101.soil.group_unclassified_WD2101.soil.group_unclassified_WD2101.soil.group_unclassified Bacteria_Planctomycetes_Pla4.lineage_Pla4.lineage_unclassified_Pla4.lineage_unclassified_Pla4.lineage_unclassified_Pla4.lineage_unclassified Bacteria_Chloroflexi_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified Bacteria_Chloroflexi_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified.1 Bacteria_Chloroflexi_Caldilineae_Caldilineales_Caldilineaceae_Caldilineaceae_unclassified_Caldilineaceae_unclassified Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_Anaerolineaceae_unclassified_Anaerolineaceae_unclassified Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_Roseiflexus_Roseiflexus_unclassified Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_Roseiflexus_Roseiflexus_unclassified.1 Bacteria_Chloroflexi_Thermomicrobia_Thermomicrobia_unclassified_Thermomicrobia_unclassified_Thermomicrobia_unclassified_Thermomicrobia_unclassified Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacterales_unclassified_Ktedonobacterales_unclassified_Ktedonobacterales_unclassified Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.1 Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.2 Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.3 Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.4 Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.5 Bacteria_Verrucomicrobia_OPB35.soil.group_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified_OPB35.soil.group_unclassified.6 Bacteria_Verrucomicrobia_Verrucomicrobia_unclassified_Verrucomicrobia_unclassified_Verrucomicrobia_unclassified_Verrucomicrobia_unclassified_Verrucomicrobia_unclassified Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.1 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.2 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.3 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.4 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.5 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.6 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.7 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.8 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.9 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.10 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.11 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.12 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.13 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.14 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.15 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.16 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.65 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.1 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.2 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.4 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.5 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.6 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.7 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.8 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.9 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.10 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.11 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.12 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.13 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.14 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.15 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.16 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified.1 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified.2 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobium_Verrucomicrobium_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.17 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.1 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.2 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.4 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.5 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.6 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.7 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.8 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.9 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.10 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.18 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.19 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.20 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.21 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.22 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.23 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.24 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.25 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.26 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.27 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.28 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_FukuN18.freshwater.group_FukuN18.freshwater.group_unclassified_FukuN18.freshwater.group_unclassified Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified.1 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified.2 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified.3 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_FukuN18.freshwater.group_FukuN18.freshwater.group_unclassified_FukuN18.freshwater.group_unclassified.1 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.1 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.2 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.3 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.4 Bacteria_Verrucomicrobia_Verrucomicrobia.Incertae.Sedis_Unknown.Order_Unknown.Family_Candidatus.Methylacidiphilum_Candidatus.Methylacidiphilum_unclassified Bacteria_Fusobacteria_Fusobacteriia_Fusobacteriales_Leptotrichiaceae_Leptotrichia_Leptotrichia_unclassified Bacteria_Fusobacteria_Fusobacteriia_Fusobacteriales_Leptotrichiaceae_Leptotrichiaceae_unclassified_Leptotrichiaceae_unclassified Bacteria_Fusobacteria_Fusobacteriia_Fusobacteriales_Leptotrichiaceae_Leptotrichiaceae_unclassified_Leptotrichiaceae_unclassified.1 Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified.2 Bacteria_Chloroflexi_KD4.96_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Bacillales_unclassified_Bacillales_unclassified_Bacillales_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Paenibacillaceae_Aneurinibacillus_Aneurinibacillus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus.clausii Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillales_unclassified_Bacillales_unclassified_Bacillales_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified.2 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Staphylococcaceae_Jeotgalicoccus_Jeotgalicoccus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Staphylococcaceae_Staphylococcus_Staphylococcus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Staphylococcaceae_Staphylococcus_Staphylococcus_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus_unclassified.2 Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Turicibacter_Turicibacter_unclassified Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Turicibacter_Turicibacter_unclassified.1 Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Turicibacter_Turicibacter_unclassified.2 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillales_unclassified_Bacillales_unclassified_Bacillales_unclassified.2 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Solibacillus_Solibacillus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Lysinibacillus_Lysinibacillus_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillales_unclassified_Bacillales_unclassified_Bacillales_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Solibacillus_Solibacillus_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Planococcaceae_unclassified_Planococcaceae_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Lysinibacillus_Lysinibacillus_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_Bacillus.coagulans Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Geobacillus_Geobacillus.stearothermophilus Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillaceae_unclassified_Bacillaceae_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillaceae_unclassified_Bacillaceae_unclassified.2 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillaceae_unclassified_Bacillaceae_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Anoxybacillus_Anoxybacillus_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillaceae_unclassified_Bacillaceae_unclassified.4 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.27 Bacteria_Tenericutes_Mollicutes_NB1.n_NB1.n_unclassified_NB1.n_unclassified_NB1.n_unclassified Bacteria_Tenericutes_Mollicutes_RF9_RF9_unclassified_RF9_unclassified_RF9_unclassified Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.28 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.25 Bacteria_Chloroflexi_KD4.96_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Aerococcaceae_Facklamia_Facklamia_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Aerococcaceae_Aerococcaceae_unclassified_Aerococcaceae_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactococcus_Lactococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactococcus_Lactococcus_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Streptococcus_Streptococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Streptococcus_Streptococcus.gallolyticus.subsp..macedonicus Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Streptococcus_Streptococcus.gallolyticus.subsp..macedonicus.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacterium_Carnobacterium_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Enterococcaceae_Enterococcus_Enterococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Trichococcus_Trichococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Trichococcus_Trichococcus_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Atopostipes_Atopostipes_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Atopostipes_Atopostipes_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Atopostipes_Atopostipes_unclassified.2 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacteriaceae_unclassified_Carnobacteriaceae_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacteriaceae_unclassified_Carnobacteriaceae_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Aerococcaceae_Aerococcus_Aerococcus_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Syntrophomonadaceae_Syntrophomonas_Syntrophomonas_unclassified Bacteria_SHA.109_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptococcaceae_Desulfosporosinus_Desulfosporosinus_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Chlamydiaceae_Chlamydiaceae_unclassified_Chlamydiaceae_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Chlamydiaceae_Chlamydiaceae_unclassified_Chlamydiaceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptococcaceae_Desulfosporosinus_Desulfosporosinus_unclassified.1 Bacteria_Firmicutes_Clostridia_Thermoanaerobacterales_Family.III_Thermoanaerobacterium_Thermoanaerobacterium_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Family.XIII_unclassified_Family.XIII_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Mogibacterium_Mogibacterium_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Mogibacterium_Mogibacterium_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Eubacteriaceae_Acetobacterium_Acetobacterium_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Eubacteriaceae_Eubacteriaceae_unclassified_Eubacteriaceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Gracilibacteraceae_Gracilibacteraceae_unclassified_Gracilibacteraceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia.porcellionis.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.3 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.4 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.5 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.3 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.4 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.2 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.5 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified.4 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_cvE6_cvE6_unclassified_cvE6_unclassified.5 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospiraceae_unclassified_Lachnospiraceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospira_Lachnospira_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospiraceae_unclassified_Lachnospiraceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Subdoligranulum_Subdoligranulum_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Subdoligranulum_Subdoligranulum_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Cellulosilyticum_Cellulosilyticum_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Cellulosilyticum_Cellulosilyticum_unclassified.1 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.29 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Anaerostipes_Anaerostipes_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcus_Ruminococcus_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcus_Ruminococcus_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.3 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.4 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.13_Clostridium.sensu.stricto.13_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.9_Clostridium.sensu.stricto.9_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.5 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.6 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.7 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.1_Clostridium.sensu.stricto.1_unclassified.8 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridium.sensu.stricto.12_Clostridium.sensu.stricto.12_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.3 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.4 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.5 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.6 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.7 Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Erysipelotrichaceae_unclassified_Erysipelotrichaceae_unclassified Bacteria_Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae_Megamonas_Megamonas_unclassified Bacteria_Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae_Veillonellaceae_unclassified_Veillonellaceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Pseudobutyrivibrio_Pseudobutyrivibrio_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Roseburia_Roseburia_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospiraceae_unclassified_Lachnospiraceae_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Blautia_Blautia_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Blautia_Blautia_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Incertae.Sedis_Incertae.Sedis_unclassified Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified.3 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Bacteria_Cyanobacteria_Cyanobacteria_SubsectionIII_FamilyI_Microcoleus_Microcoleus_unclassified Bacteria_Cyanobacteria_Melainabacteria_Caenarcaniphilales_Caenarcaniphilales_unclassified_Caenarcaniphilales_unclassified_Caenarcaniphilales_unclassified.1
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Metadata

The metadata is a matrix with samples (n) as rows and two required columns is_control and sample_type. Two optional columns can be included named batch and sample_well. It is important that the naming scheme of the columns for the metadata match as seen below.

  • is_control - Boolean variable where TRUE indicates a extraction negative control sample and FALSE otherwise.

  • sample_type - Sample types named by string, indicating which samples should be read together.

  • (optional) batch - String indicating batch.

  • (optional) sample_well - String that indicates the well location of the sample. Must be in LETTER-NUMBER format, e.g. A1.

The following is the metadata for pipeline 1.

metadata_1 = read.csv('metadata_pipeline1.csv', row.names = 1)

# append batch data
metadata_1$batch = rep('A')

metadata_1 %>% kable()  %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
sample_type is_control batch
Blank Blank TRUE A
D0 Mock FALSE A
D1 Mock FALSE A
D2 Mock FALSE A
D3 Mock FALSE A
D4 Mock FALSE A
D5 Mock FALSE A
D6 Mock FALSE A
D7 Mock FALSE A
D8 Mock FALSE A

The following is the metadata for pipeline 2.

metadata_2 = read.csv('metadata_pipeline2.csv', row.names = 1)

metadata_2 %>% kable() %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
sample_type batch is_control
037_25_10_17_KIT1 Plasma F FALSE
037_25_10_17_KIT2 Plasma G FALSE
049_16_11_16_KIT1 Plasma F FALSE
049_16_11_16_KIT2 Plasma G FALSE
050_19_06_15_KIT1 Plasma F FALSE
050_19_06_15_KIT2 Plasma G FALSE
060_09_06_15_KIT1 Plasma F FALSE
060_09_06_15_KIT2 Plasma G FALSE
075_23_06_15_KIT1 Plasma F FALSE
075_23_06_15_KIT2 Plasma G FALSE
079_22_06_15_KIT1 Plasma F FALSE
079_22_06_15_KIT2 Plasma G FALSE
094_05_06_15_KIT1 Plasma F FALSE
094_05_06_15_KIT2 Plasma G FALSE
103_30_05_17_KIT1 Plasma F FALSE
103_30_05_17_KIT2 Plasma G FALSE
109_26_05_17_KIT1 Plasma F FALSE
109_26_05_17_KIT2 Plasma G FALSE
117_19_06_15_KIT1 Plasma F FALSE
117_19_06_15_KIT2 Plasma G FALSE
128_18_11_16_KIT1 Plasma F FALSE
128_18_11_16_KIT2 Plasma G FALSE
137_30_05_17_KIT1 Plasma F FALSE
137_30_05_17_KIT2 Plasma G FALSE
138_17_11_16_KIT1 Plasma F FALSE
138_17_11_16_KIT2 Plasma G FALSE
139_25_10_17_KIT1 Plasma F FALSE
139_25_10_17_KIT2 Plasma G FALSE
159_23_05_17_KIT1 Plasma F FALSE
159_23_05_17_KIT2 Plasma G FALSE
BLANK_KIT1_EXP1_NUM1 DENC F TRUE
BLANK_KIT1_EXP1_NUM2 DENC F TRUE
BLANK_KIT1_EXP1_NUM3 DENC F TRUE
BLANK_KIT1_EXP1_NUM4 DENC F TRUE
BLANK_KIT1_EXP2_NUM1 DENC F TRUE
BLANK_KIT1_EXP2_NUM2 DENC F TRUE
BLANK_KIT1_EXP2_NUM3 DENC F TRUE
BLANK_KIT1_EXP2_NUM4 DENC F TRUE
BLANK_KIT1_EXP3_NUM1 DENC F TRUE
BLANK_KIT1_EXP3_NUM2 DENC F TRUE
BLANK_KIT1_EXP3_NUM3 DENC F TRUE
BLANK_KIT1_EXP3_NUM4 DENC F TRUE
BLANK_KIT2_EXP1_NUM1 DENC G TRUE
BLANK_KIT2_EXP1_NUM2 DENC G TRUE
BLANK_KIT2_EXP1_NUM3 DENC G TRUE
BLANK_KIT2_EXP1_NUM4 DENC G TRUE
BLANK_KIT2_EXP2_NUM1 DENC G TRUE
BLANK_KIT2_EXP2_NUM2 DENC G TRUE
BLANK_KIT2_EXP2_NUM3 DENC G TRUE
BLANK_KIT2_EXP2_NUM4 DENC G TRUE
BLANK_KIT2_EXP3_NUM1 DENC G TRUE
BLANK_KIT2_EXP3_NUM2 DENC G TRUE
BLANK_KIT2_EXP3_NUM3 DENC G TRUE
BLANK_KIT2_EXP3_NUM4 DENC G TRUE
PM00995_KIT1 Plasma F FALSE
PM00995_KIT2 Plasma G FALSE
PM01011_KIT1 Plasma F FALSE
PM01011_KIT2 Plasma G FALSE
PM01016_KIT1 Plasma F FALSE
PM01016_KIT2 Plasma G FALSE
PM01043_KIT1 Plasma F FALSE
PM01043_KIT2 Plasma G FALSE
PM01054_KIT1 Plasma F FALSE
PM01054_KIT2 Plasma G FALSE
PM01057_KIT1 Plasma F FALSE
PM01057_KIT2 Plasma G FALSE
PM01060_KIT1 Plasma F FALSE
PM01060_KIT2 Plasma G FALSE
PM01064_KIT1 Plasma F FALSE
PM01064_KIT2 Plasma G FALSE
PM01070_KIT1 Plasma F FALSE
PM01070_KIT2 Plasma G FALSE
PM01074_KIT1 Plasma F FALSE
PM01074_KIT2 Plasma G FALSE
PM01075_KIT1 Plasma F FALSE
PM01075_KIT2 Plasma G FALSE
PM01087_KIT1 Plasma F FALSE
PM01087_KIT2 Plasma G FALSE
PM01088_KIT1 Plasma F FALSE
PM01088_KIT2 Plasma G FALSE
PM01093_KIT1 Plasma F FALSE
PM01093_KIT2 Plasma G FALSE
PM1009_KIT1 Plasma F FALSE
PM1009_KIT2 Plasma G FALSE

We can use these data to see how our pipelines work.

Pipelines

pipeline1

This pipeline should be used when the user:

  1. Has sample well information available

  2. Wants to primarily characterize the original composition of the sample prior to contamination

  3. Has only one batch, or has multiple batches if negative controls are present in each

Furthermore, users must have control samples present in each batch for this method to be used.

This pipeline implements the SCRuB method for decontamination (Austin et al., 2023). To run this pipeline, the user can input their data as such:

pipeline_1_results = pipeline1(counts = counts_1,
                               meta = metadata_1,
                               control_name = 'Blank')
## [1] "Incorporating the well metadata to track well-to-well leakage!"
## [1] "SCRuBbing away contamination in the Blank controls..."
## [1] "Incorporating the well metadata to track well-to-well leakage!"
## [1] "SCRuBbing away contamination in the Blank controls..."
## [1] "Did not find well metadata, running SCRuB without the spatial component"
## [1] "SCRuBbing away contamination in the Blank controls..."

Once run, the pipeline will return a list object with:

  1. Decontaminated counts matrix (decontaminated_count) - A samples (n) by features (p) matrix with the decontaminated counts
pipeline_1_results$decontaminated_count %>% kable()  %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
ASV_1 ASV_2 ASV_3 ASV_4 ASV_5 ASV_6 ASV_7 ASV_8 ASV_9 ASV_10 ASV_11 ASV_12 ASV_13 ASV_14 ASV_15 ASV_16 ASV_17 ASV_18 ASV_19 ASV_20 ASV_21 ASV_22 ASV_23 ASV_24 ASV_25 ASV_26 ASV_27 ASV_28 ASV_29 ASV_30 ASV_31 ASV_32 ASV_33 ASV_34 ASV_35 ASV_36 ASV_37 ASV_38 ASV_39 ASV_40 ASV_41 ASV_42 ASV_43 ASV_44 ASV_45 ASV_46 ASV_47 ASV_48 ASV_49 ASV_50 ASV_51 ASV_52 ASV_53 ASV_54 ASV_55 ASV_56 ASV_57 ASV_58 ASV_59 ASV_60 ASV_61 ASV_62 ASV_63 ASV_64 ASV_65 ASV_66 ASV_67 ASV_68 ASV_69 ASV_70 ASV_71 ASV_72 ASV_73 ASV_74 ASV_75 ASV_76 ASV_77 ASV_78 ASV_79 ASV_80 ASV_81 ASV_82 ASV_83 ASV_84 ASV_85 ASV_86 ASV_87 ASV_88 ASV_89 ASV_90 ASV_91 ASV_92 ASV_93 ASV_94 ASV_95 ASV_96 ASV_97 ASV_98 ASV_99 ASV_100 ASV_101 ASV_102 ASV_103 ASV_104 ASV_105 ASV_106 ASV_107 ASV_108 ASV_109 ASV_110 ASV_111 ASV_112 ASV_113 ASV_114 ASV_115 ASV_116 ASV_117 ASV_118 ASV_119 ASV_120 ASV_121 ASV_122 ASV_123 ASV_124 ASV_125 ASV_126 ASV_127 ASV_128 ASV_129 ASV_130 ASV_131 ASV_132 ASV_133 ASV_134 ASV_135 ASV_136 ASV_137 ASV_138 ASV_139 ASV_140 ASV_141 ASV_142 ASV_143 ASV_144 ASV_145 ASV_146 ASV_147 ASV_148 ASV_149 ASV_150 ASV_151 ASV_152 ASV_153 ASV_154 ASV_155 ASV_156 ASV_157 ASV_158 ASV_159 ASV_160 ASV_161 ASV_162 ASV_163 ASV_164 ASV_165 ASV_166 ASV_167 ASV_168 ASV_169 ASV_170 ASV_171 ASV_172 ASV_173 ASV_174 ASV_175 ASV_176 ASV_177 ASV_178 ASV_179 ASV_180 ASV_181 ASV_182 ASV_183 ASV_184 ASV_185 ASV_186 ASV_187 ASV_188 ASV_189 ASV_190 ASV_191 ASV_192 ASV_193 ASV_194 ASV_195 ASV_196 ASV_197 ASV_198 ASV_199 ASV_200 ASV_201 ASV_202 ASV_203 ASV_204 ASV_205 ASV_206 ASV_207 ASV_208 ASV_209 ASV_210 ASV_211 ASV_212 ASV_213 ASV_214 ASV_215 ASV_216 ASV_217 ASV_218 ASV_219 ASV_220 ASV_221 ASV_222 ASV_223 ASV_224 ASV_225 ASV_226 ASV_227 ASV_228 ASV_229 ASV_230 ASV_231 ASV_232 ASV_233 ASV_234 ASV_235 ASV_236 ASV_237 ASV_238 ASV_239 ASV_240 ASV_241 ASV_242 ASV_243 ASV_244 ASV_245 ASV_246 ASV_247 ASV_248 ASV_249 ASV_250 ASV_251 ASV_252 ASV_253 ASV_254 ASV_255 ASV_256 ASV_257 ASV_258 ASV_259 ASV_260 ASV_261 ASV_262 ASV_263 ASV_264 ASV_265 ASV_266 ASV_267 ASV_268 ASV_269 ASV_270 ASV_271 ASV_272 ASV_273 ASV_274 ASV_275 ASV_276 ASV_277 ASV_278 ASV_279 ASV_280 ASV_281 ASV_282 ASV_283 ASV_284 ASV_285 ASV_286 ASV_287 ASV_288 ASV_289 ASV_290 ASV_291 ASV_292 ASV_293 ASV_294 ASV_295 ASV_296 ASV_297 ASV_298 ASV_299 ASV_300 ASV_301 ASV_302 ASV_303 ASV_304 ASV_305 ASV_306 ASV_307 ASV_308 ASV_309 ASV_310 ASV_311 ASV_312 ASV_313 ASV_314 ASV_315 ASV_316 ASV_317 ASV_318 ASV_319 ASV_320 ASV_321 ASV_322 ASV_323 ASV_324 ASV_325 ASV_326 ASV_327 ASV_328 ASV_329 ASV_330 ASV_331 ASV_332 ASV_333 ASV_334 ASV_335 ASV_336 ASV_337 ASV_338 ASV_339 ASV_340 ASV_341 ASV_342 ASV_343 ASV_344 ASV_345 ASV_346 ASV_347 ASV_348 ASV_349 ASV_350 ASV_351 ASV_352 ASV_353 ASV_354 ASV_355 ASV_356 ASV_357 ASV_358 ASV_359 ASV_360 ASV_361 ASV_362 ASV_363 ASV_364 ASV_365 ASV_366 ASV_367 ASV_368 ASV_369 ASV_370 ASV_371 ASV_372 ASV_373 ASV_374 ASV_375 ASV_376 ASV_377 ASV_378 ASV_379 ASV_380 ASV_381 ASV_382 ASV_383 ASV_384 ASV_385 ASV_386 ASV_387 ASV_388 ASV_389 ASV_390 ASV_391 ASV_392 ASV_393 ASV_394 ASV_395 ASV_396 ASV_397 ASV_398 ASV_399 ASV_400 ASV_401 ASV_402 ASV_403 ASV_404 ASV_405 ASV_406 ASV_407 ASV_408 ASV_409 ASV_410 ASV_411 ASV_412 ASV_413 ASV_414 ASV_415 ASV_416 ASV_417 ASV_418 ASV_419 ASV_420 ASV_421 ASV_422 ASV_423 ASV_424 ASV_425 ASV_426 ASV_427 ASV_428 ASV_429 ASV_430 ASV_431 ASV_432 ASV_433 ASV_434 ASV_435 ASV_436 ASV_437 ASV_438 ASV_439 ASV_440 ASV_441 ASV_442 ASV_443 ASV_444 ASV_445 ASV_446 ASV_447 ASV_448 ASV_449 ASV_450 ASV_451 ASV_452 ASV_453 ASV_454 ASV_455 ASV_456 ASV_457 ASV_458 ASV_459 ASV_460 ASV_461 ASV_462 ASV_463 ASV_464 ASV_465 ASV_466 ASV_467 ASV_468 ASV_469 ASV_470 ASV_471 ASV_472 ASV_473 ASV_474 ASV_475 ASV_476 ASV_477 ASV_478 ASV_479 ASV_480 ASV_481 ASV_482 ASV_483 ASV_484 ASV_485 ASV_486 ASV_487 ASV_488 ASV_489 ASV_490 ASV_491 ASV_492 ASV_493 ASV_494 ASV_495 ASV_496 ASV_497 ASV_498 ASV_499 ASV_500 ASV_501 ASV_502 ASV_503 ASV_504 ASV_505 ASV_506 ASV_507 ASV_508 ASV_509 ASV_510 ASV_511 ASV_512 ASV_513 ASV_514 ASV_515 ASV_516 ASV_517 ASV_518 ASV_519 ASV_520 ASV_521 ASV_522 ASV_523 ASV_524 ASV_525 ASV_526 ASV_527 ASV_528 ASV_529 ASV_530 ASV_531 ASV_532 ASV_533 ASV_534 ASV_535 ASV_536 ASV_537 ASV_538 ASV_539 ASV_540 ASV_541 ASV_542 ASV_543 ASV_544 ASV_545 ASV_546 ASV_547 ASV_548 ASV_549 ASV_550 ASV_551 ASV_552 ASV_553 ASV_554 ASV_555 ASV_556 ASV_557 ASV_558 ASV_559 ASV_560 ASV_561 ASV_562 ASV_563 ASV_564 ASV_565 ASV_566 ASV_567 ASV_568 ASV_569 ASV_570 ASV_571 ASV_572 ASV_573 ASV_574 ASV_575 ASV_576 ASV_577 ASV_578 ASV_579 ASV_580 ASV_581 ASV_582 ASV_583 ASV_584 ASV_585 ASV_586 ASV_587 ASV_588 ASV_589 ASV_590 ASV_591 ASV_592 ASV_593 ASV_594 ASV_595 ASV_596 ASV_597 ASV_598 ASV_599 ASV_600 ASV_601 ASV_602 ASV_603 ASV_604 ASV_605 ASV_606 ASV_607 ASV_608 ASV_609 ASV_610 ASV_611 ASV_612 ASV_613 ASV_614 ASV_615 ASV_616 ASV_617 ASV_618 ASV_619 ASV_620 ASV_621 ASV_622 ASV_623 ASV_624 ASV_625 ASV_626 ASV_627 ASV_628 ASV_629 ASV_630 ASV_631 ASV_632 ASV_633 ASV_634 ASV_635 ASV_636 ASV_637 ASV_638 ASV_639 ASV_640 ASV_641 ASV_642 ASV_643 ASV_644 ASV_645 ASV_646 ASV_647 ASV_648 ASV_649 ASV_650 ASV_651 ASV_652 ASV_653 ASV_654 ASV_655 ASV_656 ASV_657 ASV_658 ASV_659 ASV_660 ASV_661 ASV_662 ASV_663 ASV_664 ASV_665 ASV_666 ASV_667 ASV_668 ASV_669 ASV_670 ASV_671 ASV_672 ASV_673 ASV_674 ASV_675 ASV_676 ASV_677 ASV_678 ASV_679 ASV_680 ASV_681 ASV_682 ASV_683 ASV_684 ASV_685 ASV_686 ASV_687 ASV_688 ASV_689 ASV_690 ASV_691 ASV_692 ASV_693 ASV_694 ASV_695 ASV_696 ASV_697 ASV_698 ASV_699 ASV_700 ASV_701 ASV_702 ASV_703 ASV_704 ASV_705 ASV_706 ASV_707 ASV_708 ASV_709 ASV_710 ASV_711 ASV_712 ASV_713 ASV_714 ASV_715 ASV_716 ASV_717 ASV_718 ASV_719 ASV_720 ASV_721 ASV_722 ASV_723 ASV_724 ASV_725 ASV_726 ASV_727 ASV_728 ASV_729 ASV_730 ASV_731 ASV_732 ASV_733 ASV_734 ASV_735 ASV_736 ASV_737 ASV_738 ASV_739 ASV_740 ASV_741 ASV_742 ASV_743 ASV_744 ASV_745 ASV_746 ASV_747 ASV_748 ASV_749 ASV_750 ASV_751 ASV_752 ASV_753 ASV_754 ASV_755 ASV_756 ASV_757 ASV_758 ASV_759 ASV_760 ASV_761 ASV_762 ASV_763 ASV_764 ASV_765 ASV_766 ASV_767 ASV_768 ASV_769 ASV_770 ASV_771 ASV_772 ASV_773 ASV_774 ASV_775 ASV_776 ASV_777 ASV_778 ASV_779 ASV_780 ASV_781 ASV_782 ASV_783 ASV_784 ASV_785 ASV_786 ASV_787 ASV_788 ASV_789 ASV_790 ASV_791 ASV_792 ASV_793 ASV_794 ASV_795 ASV_796 ASV_797 ASV_798 ASV_799 ASV_800 ASV_801 ASV_802 ASV_803 ASV_804 ASV_805 ASV_806 ASV_807 ASV_808 ASV_809 ASV_810 ASV_811 ASV_812 ASV_813 ASV_814 ASV_815 ASV_816 ASV_817 ASV_818 ASV_819 ASV_820 ASV_821 ASV_822 ASV_823 ASV_824 ASV_825 ASV_826 ASV_827 ASV_828 ASV_829 ASV_830 ASV_831 ASV_832 ASV_833 ASV_834 ASV_835 ASV_836 ASV_837 ASV_838 ASV_839 ASV_840 ASV_841 ASV_842 ASV_843 ASV_844 ASV_845 ASV_846 ASV_847 ASV_848 ASV_849 ASV_850 ASV_851 ASV_852 ASV_853 ASV_854 ASV_855 ASV_856 ASV_857 ASV_858 ASV_859 ASV_860 ASV_861 ASV_862 ASV_863 ASV_864 ASV_865 ASV_866 ASV_867 ASV_868 ASV_869 ASV_870 ASV_871 ASV_872 ASV_873 ASV_874 ASV_875 ASV_876 ASV_877 ASV_878 ASV_879 ASV_880 ASV_881 ASV_882 ASV_883 ASV_884 ASV_885 ASV_886 ASV_887 ASV_888 ASV_889 ASV_890 ASV_891 ASV_892 ASV_893 ASV_894 ASV_895 ASV_896 ASV_897 ASV_898 ASV_899 ASV_900 ASV_901 ASV_902 ASV_903 ASV_904 ASV_905 ASV_906 ASV_907 ASV_908 ASV_909 ASV_910 ASV_911 ASV_912 ASV_913 ASV_914 ASV_915 ASV_916 ASV_917 ASV_918 ASV_919 ASV_920 ASV_921 ASV_922 ASV_923 ASV_924 ASV_925 ASV_926 ASV_927 ASV_928 ASV_929 ASV_930 ASV_931 ASV_932 ASV_933 ASV_934 ASV_935 ASV_936 ASV_937 ASV_938 ASV_939 ASV_940 ASV_941 ASV_942 ASV_943 ASV_944 ASV_945 ASV_946 ASV_947 ASV_948 ASV_949 ASV_950 ASV_951 ASV_952 ASV_953 ASV_954 ASV_955 ASV_956 ASV_957 ASV_958 ASV_959 ASV_960 ASV_961 ASV_962 ASV_963 ASV_964 ASV_965 ASV_966 ASV_967 ASV_968 ASV_969 ASV_970 ASV_971 ASV_972 ASV_973 ASV_974 ASV_975 ASV_976 ASV_977 ASV_978 ASV_979 ASV_980 ASV_981 ASV_982 ASV_983 ASV_984 ASV_985 ASV_986 ASV_987 ASV_988 ASV_989 ASV_990 ASV_991 ASV_992 ASV_993 ASV_994 ASV_995 ASV_996 ASV_997 ASV_998 ASV_999 ASV_1000 ASV_1001 ASV_1002 ASV_1003 ASV_1004 ASV_1005 ASV_1006 ASV_1007 ASV_1008 ASV_1009 ASV_1010 ASV_1011 ASV_1012 ASV_1013 ASV_1014 ASV_1015 ASV_1016 ASV_1017 ASV_1018 ASV_1019 ASV_1020 ASV_1021 ASV_1022 ASV_1023 ASV_1024 ASV_1025 ASV_1026 ASV_1027 ASV_1028 ASV_1029 ASV_1030 ASV_1031 ASV_1032 ASV_1033 ASV_1034 ASV_1035 ASV_1036 ASV_1037 ASV_1038 ASV_1039 ASV_1040 ASV_1041 ASV_1042 ASV_1043 ASV_1044 ASV_1045 ASV_1046 ASV_1047 ASV_1048 ASV_1049 ASV_1050 ASV_1051 ASV_1052 ASV_1053 ASV_1054 ASV_1055 ASV_1056 ASV_1057 ASV_1058 ASV_1059 ASV_1060 ASV_1061 ASV_1062 ASV_1063 ASV_1064 ASV_1065 ASV_1066 ASV_1067 ASV_1068 ASV_1069 ASV_1070 ASV_1071 ASV_1072 ASV_1073 ASV_1074 ASV_1075 ASV_1076 ASV_1077 ASV_1078 ASV_1079 ASV_1080 ASV_1081 ASV_1082 ASV_1083 ASV_1084 ASV_1085 ASV_1086 ASV_1087 ASV_1088 ASV_1089 ASV_1090 ASV_1091 ASV_1092 ASV_1093 ASV_1094 ASV_1095 ASV_1096 ASV_1097 ASV_1098 ASV_1099 ASV_1100 ASV_1101 ASV_1102 ASV_1103 ASV_1104 ASV_1105 ASV_1106 ASV_1107 ASV_1108 ASV_1109 ASV_1110 ASV_1111 ASV_1112 ASV_1113 ASV_1114 ASV_1115 ASV_1116 ASV_1117 ASV_1118 ASV_1119 ASV_1120 ASV_1121 ASV_1122 ASV_1123 ASV_1124 ASV_1125 ASV_1126 ASV_1127 ASV_1128 ASV_1129 ASV_1130 ASV_1131 ASV_1132 ASV_1133 ASV_1134 ASV_1135 ASV_1136 ASV_1137 ASV_1138 ASV_1139 ASV_1140 ASV_1141 ASV_1142 ASV_1143 ASV_1144 ASV_1145 ASV_1146 ASV_1147 ASV_1148 ASV_1149 ASV_1150 ASV_1151 ASV_1152 ASV_1153 ASV_1154 ASV_1155 ASV_1156 ASV_1157 ASV_1158 ASV_1159 ASV_1160 ASV_1161 ASV_1162 ASV_1163 ASV_1164 ASV_1165 ASV_1166 ASV_1167 ASV_1168 ASV_1169 ASV_1170 ASV_1171 ASV_1172 ASV_1173 ASV_1174 ASV_1175 ASV_1176 ASV_1177 ASV_1178 ASV_1179 ASV_1180 ASV_1181 ASV_1182 ASV_1183 ASV_1184 ASV_1185 ASV_1186 ASV_1187 ASV_1188 ASV_1189 ASV_1190 ASV_1191 ASV_1192 ASV_1193 ASV_1194 ASV_1195 ASV_1196 ASV_1197 ASV_1198 ASV_1199 ASV_1200 ASV_1201 ASV_1202 ASV_1203 ASV_1204 ASV_1205 ASV_1206 ASV_1207 ASV_1208 ASV_1209 ASV_1210 ASV_1211 ASV_1212 ASV_1213 ASV_1214 ASV_1215 ASV_1216 ASV_1217 ASV_1218 ASV_1219 ASV_1220 ASV_1221 ASV_1222 ASV_1223 ASV_1224 ASV_1225 ASV_1226 ASV_1227 ASV_1228 ASV_1229 ASV_1230 ASV_1231 ASV_1232 ASV_1233 ASV_1234 ASV_1235 ASV_1236 ASV_1237 ASV_1238 ASV_1239 ASV_1240 ASV_1241 ASV_1242 ASV_1243 ASV_1244 ASV_1245 ASV_1246 ASV_1247 ASV_1248 ASV_1249 ASV_1250 ASV_1251 ASV_1252 ASV_1253 ASV_1254 ASV_1255 ASV_1256 ASV_1257 ASV_1258 ASV_1259 ASV_1260 ASV_1261 ASV_1262 ASV_1263 ASV_1264 ASV_1265 ASV_1266 ASV_1267 ASV_1268 ASV_1269 ASV_1270 ASV_1271 ASV_1272 ASV_1273 ASV_1274 ASV_1275 ASV_1276 ASV_1277 ASV_1278 ASV_1279 ASV_1280 ASV_1281 ASV_1282 ASV_1283 ASV_1284 ASV_1285 ASV_1286 ASV_1287 ASV_1288 ASV_1289 ASV_1290 ASV_1291 ASV_1292 ASV_1293 ASV_1294 ASV_1295 ASV_1296 ASV_1297 ASV_1298 ASV_1299 ASV_1300 ASV_1301 ASV_1302 ASV_1303 ASV_1304 ASV_1305 ASV_1306 ASV_1307 ASV_1308 ASV_1309 ASV_1310 ASV_1311 ASV_1312 ASV_1313 ASV_1314 ASV_1315 ASV_1316 ASV_1317 ASV_1318 ASV_1319 ASV_1320 ASV_1321 ASV_1322 ASV_1323 ASV_1324 ASV_1325 ASV_1326 ASV_1327 ASV_1328 ASV_1329 ASV_1330 ASV_1331 ASV_1332 ASV_1333 ASV_1334 ASV_1335 ASV_1336 ASV_1337 ASV_1338 ASV_1339 ASV_1340 ASV_1341 ASV_1342 ASV_1343 ASV_1344 ASV_1345 ASV_1346 ASV_1347 ASV_1348 ASV_1349 ASV_1350 ASV_1351 ASV_1352 ASV_1353 ASV_1354 ASV_1355 ASV_1356 ASV_1357 ASV_1358 ASV_1359 ASV_1360 ASV_1361 ASV_1362 ASV_1363 ASV_1364 ASV_1365 ASV_1366 ASV_1367 ASV_1368 ASV_1369 ASV_1370 ASV_1371 ASV_1372 ASV_1373 ASV_1374 ASV_1375 ASV_1376 ASV_1377 ASV_1378 ASV_1379 ASV_1380 ASV_1381 ASV_1382 ASV_1383 ASV_1384 ASV_1385 ASV_1386 ASV_1387 ASV_1388 ASV_1389 ASV_1390 ASV_1391 ASV_1392 ASV_1393 ASV_1394 ASV_1395 ASV_1396 ASV_1397 ASV_1398 ASV_1399 ASV_1400 ASV_1401 ASV_1402 ASV_1403 ASV_1404 ASV_1405 ASV_1406 ASV_1407 ASV_1408 ASV_1409 ASV_1410 ASV_1411 ASV_1412 ASV_1413 ASV_1414
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D8 1308 0 861 1966 319 937 622 0 0 534 0 0 1180 0 0 0 604 0 0 0 1330 0 0 0 0 0 0 0 0 0 0 0 0 153 0 0 0 0 0 0 0 0 0 0 0 0 0 277 0 0 0 0 0 0 0 0 0 0 0 254 473 0 0 0 172 0 0 0 0 0 0 0 0 0 0 224 98 0 391 0 0 0 0 0 0 0 0 0 0 121 426 0 142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 272 302 214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 394 0 0 0 0 0 0 0 233 0 210 0 340 0 204 0 0 298 0 0 0 0 0 0 0 0 0 0 0 344 0 0 0 0 251 0 0 0 0 0 301 0 0 0 0 0 99 0 0 0 0 0 267 0 0 0 0 0 0 0 0 96 69 0 0 0 0 0 0 0 0 0 0 120 0 0 0 0 0 51 0 0 158 0 176 0 82 82 0 0 0 0 0 0 146 0 0 0 0 0 0 0 0 0 0 0 75 0 262 0 0 0 0 0 0 0 0 0 0 0 0 131 0 0 0 0 0 0 0 0 0 0 0 141 0 0 0 237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110 0 0 0 0 119 0 0 0 0 0 0 0 0 0 0 0 0 193 0 0 0 192 0 0 0 191 0 0 0 0 0 187 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175 175 0 0 0 57 0 0 136 0 0 0 171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162 162 0 0 0 0 0 0 0 0 157 0 156 0 0 155 0 153 153 153 0 0 0 0 0 0 0 0 0 0 0 148 0 0 0 0 0 0 0 0 0 0 0 0 142 0 0 139 138 0 0 0 137 137 0 136 136 0 0 135 0 108 134 0 0 0 133 0 0 0 0 0 0 131 0 0 0 0 41 0 129 0 0 0 0 0 127 0 0 0 0 0 0 0 0 0 125 0 0 0 0 0 124 0 0 0 0 0 0 0 0 0 0 0 0 121 0 120 0 0 0 0 0 118 0 0 0 0 0 116 0 0 0 0 115 0 0 114 114 114 0 0 0 0 0 0 0 0 0 0 0 0 0 112 0 0 0 0 0 0 0 110 110 110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 99 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94 0 0 0 0 0 0 93 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 0 0 0 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 0 0 0 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 0 0 0 0 0 0 0 0 0 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 0 0 0 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
  1. Filtering loss value (FL) - A numeric value between 0 and 1 indicating the contribution of the removed counts to the overall covariance. High values would be a sign of potential over-filtering
pipeline_1_results$filtering_loss
## [1] 0.2199435

Other notes:

pipeline2

This pipeline should be used when the user: 1. Wants to primarily identify potential biomarkers 2. Does not have sample well information available

Pipeline 2 contains multiple steps to identify potential contaminants, as visualized here:

To run this pipeline, first the user must input a list of known contaminants as a “blocklist”:

# blocklist
bl = c('Actinomyces','Corynebacterium','Arthrobacter',
       'Rothia','Propionibacterium','Atopobium',
       'Sediminibacterium','Porphyromonas','Prevotella',
       'Chryseobacterium','Capnocytophaga','Chryseobacterium',
       'Flavobacterium','Pedobacter','UnclassifiedTM7',
       'Bacillus','Geobacillus','Brevibacillus','Paenibacillus',
       'Staphylococcus','Abiotrophia','Granulicatella',
       'Enterococcus','Lactobacillus','Streptococcus',
       'Clostridium','Coprococcus','Anaerococcus','Dialister','Megasphaera',
       'Veillonella','Fusobacterium','Leptotrichia','Brevundimonas','Afipia',
       'Bradyrhizobium','Devosia','Methylobacterium','Mesorhizobium','Phyllobacterium',
       'Rhizobium','Methylobacterium','Phyllobacterium','Roseomonas','Novosphingobium   ',
       'Sphingobium','Sphingomonas','Achromobacter','Burkholderia','Acidovorax',
       'Comamonas','Curvibacter','Pelomonas','Cupriavidus','Duganella',
       'Herbaspirillum','Janthinobacterium','Massilia','Oxalobacter','Ralstonia',
       'Leptothrix','kingella','Neisseria','Escherichia','Haemophilus',
       'Acinetobacter','Enhydrobacter','Pseudomonas','Stenotrophomonas','Xanthomonas')
bl %>% kable() %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
x
Actinomyces
Corynebacterium
Arthrobacter
Rothia
Propionibacterium
Atopobium
Sediminibacterium
Porphyromonas
Prevotella
Chryseobacterium
Capnocytophaga
Chryseobacterium
Flavobacterium
Pedobacter
UnclassifiedTM7
Bacillus
Geobacillus
Brevibacillus
Paenibacillus
Staphylococcus
Abiotrophia
Granulicatella
Enterococcus
Lactobacillus
Streptococcus
Clostridium
Coprococcus
Anaerococcus
Dialister
Megasphaera
Veillonella
Fusobacterium
Leptotrichia
Brevundimonas
Afipia
Bradyrhizobium
Devosia
Methylobacterium
Mesorhizobium
Phyllobacterium
Rhizobium
Methylobacterium
Phyllobacterium
Roseomonas
Novosphingobium
Sphingobium
Sphingomonas
Achromobacter
Burkholderia
Acidovorax
Comamonas
Curvibacter
Pelomonas
Cupriavidus
Duganella
Herbaspirillum
Janthinobacterium
Massilia
Oxalobacter
Ralstonia
Leptothrix
kingella
Neisseria
Escherichia
Haemophilus
Acinetobacter
Enhydrobacter
Pseudomonas
Stenotrophomonas
Xanthomonas

The blocklist used above is directly from the publicly available blocklist in the study by Eisenhofer et al. (2019) which is suggested for use if the users do not have their own blocklist.

Next, the user must specify technical replicates across batches using sample names and columns for each batch as such:

# technical replicates
tr = data.frame('F' = c("037_25_10_17_KIT1","049_16_11_16_KIT1","050_19_06_15_KIT1",
               "060_09_06_15_KIT1","075_23_06_15_KIT1","079_22_06_15_KIT1",
               "094_05_06_15_KIT1","103_30_05_17_KIT1","109_26_05_17_KIT1",
               "117_19_06_15_KIT1","128_18_11_16_KIT1","137_30_05_17_KIT1",
               "138_17_11_16_KIT1","139_25_10_17_KIT1","159_23_05_17_KIT1",
               "PM00995_KIT1","PM01011_KIT1","PM01016_KIT1","PM01043_KIT1",     
               "PM01054_KIT1","PM01057_KIT1","PM01060_KIT1","PM01064_KIT1",     
               "PM01070_KIT1","PM01074_KIT1","PM01075_KIT1","PM01087_KIT1",   
               "PM01088_KIT1","PM01093_KIT1","PM1009_KIT1"),
       'G' = c("037_25_10_17_KIT2","049_16_11_16_KIT2","050_19_06_15_KIT2",
               "060_09_06_15_KIT2","075_23_06_15_KIT2","079_22_06_15_KIT2",
               "094_05_06_15_KIT2","103_30_05_17_KIT2","109_26_05_17_KIT2",
               "117_19_06_15_KIT2","128_18_11_16_KIT2","137_30_05_17_KIT2",
               "138_17_11_16_KIT2","139_25_10_17_KIT2","159_23_05_17_KIT2",
               "PM00995_KIT2","PM01011_KIT2","PM01016_KIT2",    
               "PM01043_KIT2","PM01054_KIT2","PM01057_KIT2","PM01060_KIT2",
               "PM01064_KIT2","PM01070_KIT2","PM01074_KIT2","PM01075_KIT2",
               "PM01087_KIT2","PM01088_KIT2","PM01093_KIT2","PM1009_KIT2"))
tr %>% kable() %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
F G
037_25_10_17_KIT1 037_25_10_17_KIT2
049_16_11_16_KIT1 049_16_11_16_KIT2
050_19_06_15_KIT1 050_19_06_15_KIT2
060_09_06_15_KIT1 060_09_06_15_KIT2
075_23_06_15_KIT1 075_23_06_15_KIT2
079_22_06_15_KIT1 079_22_06_15_KIT2
094_05_06_15_KIT1 094_05_06_15_KIT2
103_30_05_17_KIT1 103_30_05_17_KIT2
109_26_05_17_KIT1 109_26_05_17_KIT2
117_19_06_15_KIT1 117_19_06_15_KIT2
128_18_11_16_KIT1 128_18_11_16_KIT2
137_30_05_17_KIT1 137_30_05_17_KIT2
138_17_11_16_KIT1 138_17_11_16_KIT2
139_25_10_17_KIT1 139_25_10_17_KIT2
159_23_05_17_KIT1 159_23_05_17_KIT2
PM00995_KIT1 PM00995_KIT2
PM01011_KIT1 PM01011_KIT2
PM01016_KIT1 PM01016_KIT2
PM01043_KIT1 PM01043_KIT2
PM01054_KIT1 PM01054_KIT2
PM01057_KIT1 PM01057_KIT2
PM01060_KIT1 PM01060_KIT2
PM01064_KIT1 PM01064_KIT2
PM01070_KIT1 PM01070_KIT2
PM01074_KIT1 PM01074_KIT2
PM01075_KIT1 PM01075_KIT2
PM01087_KIT1 PM01087_KIT2
PM01088_KIT1 PM01088_KIT2
PM01093_KIT1 PM01093_KIT2
PM1009_KIT1 PM1009_KIT2

Then the user can input their data as such:

# remove eval = FALSE for individual use
pipeline_2_results = pipeline2(counts = counts_2,
                               meta = metadata_2,
                               blocklist = bl,
                               control_name = 'DENC',
                               technical_replicates = tr,
                               remove_if = 1, #optional
                               step2_threshold = 0.5) #optional

When used, this will return a warning indicating that the data has evidence of well to well contamination. The user in this case has chosen to continue using the function.

Where:

We can see that in this case, the sample appears to have evidence of high well to well contamination. The function prompts the user to decide whether to continue the run. For this vignette, we choose to continue to use pipeline2.

Once run, the pipeline will return a list object with:

  1. Decontaminated counts matrix (decontaminated_count) - A samples (n) by non-contaminant features (p - c) matrix with the decontaminated counts
pipeline_2_results$decontaminated_count %>% kable()  %>%
  kable_styling("striped", full_width = T) %>% 
 scroll_box(width = '100%', height = "300px")
Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.3 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.4 Archaea_Euryarchaeota_Halobacteria_Halobacteriales_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified_Deep.Sea.Hydrothermal.Vent.Gp.6.DHVEG.6._unclassified.5 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacteriaceae_unclassified_Methanobacteriaceae_unclassified Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.1 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.3 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.4 Archaea_Euryarchaeota_Methanobacteria_Methanobacteriales_Methanobacteriaceae_Methanobacterium_Methanobacterium_unclassified.5 Archaea_Thaumarchaeota_Marine.Group.I_Unknown.Order_Unknown.Family_Candidatus.Nitrosoarchaeum_Candidatus.Nitrosoarchaeum_unclassified Archaea_Thaumarchaeota_South.African.Gold.Mine.Gp.1.SAGMCG.1._Unknown.Order_Unknown.Family_Candidatus.Nitrosotalea_Candidatus.Nitrosotalea_unclassified Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.3 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.4 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.6 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.7 Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.8 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.4 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.10 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.11 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.14 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.15 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.17 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.19 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.21 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.23 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.24 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.25 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.26 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.28 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.30 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.31 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.32 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.36 Bacteria_BD1.5_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified_BD1.5_unclassified.38 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.1 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.5 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.6 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.9 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.10 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.12 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.13 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.18 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.19 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.21 Bacteria_SM2F11_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified_SM2F11_unclassified.22 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.9 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.6 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.10 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.11 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.15 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.11 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.18 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.20 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.23 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.25 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.26 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.28 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.29 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.30 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.31 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.33 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.34 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.35 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.36 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.38 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.40 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.41 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.43 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.44 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.47 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.48 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.49 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.50 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.59 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.61 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.62 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.63 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.65 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.66 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.68 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.71 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.80 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.82 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.85 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.86 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Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.110 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.16 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.18 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.19 Bacteria_Candidate.division.OD1_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified_Candidate.division.OD1_unclassified.111 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Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Dechloromonas_Dechloromonas_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_12up_12up_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Candidatus.Accumulibacter_Candidatus.Accumulibacter_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Rhodocyclales_Rhodocyclaceae_Zoogloea_Zoogloea_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Hydrogenophilales_Hydrogenophilaceae_Hydrogenophilaceae_unclassified_Hydrogenophilaceae_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.1 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylophilaceae_unclassified_Methylophilaceae_unclassified.2 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.3 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.6 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_Methylotenera_Methylotenera_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_Methylophilales_Methylophilaceae_LD28.freshwater.group_LD28.freshwater.group_unclassified Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.4 Bacteria_Proteobacteria_Betaproteobacteria_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified_Betaproteobacteria_unclassified.7 Bacteria_Proteobacteria_Betaproteobacteria_SC.I.84_SC.I.84_unclassified_SC.I.84_unclassified_SC.I.84_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_C1.B045_C1.B045_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_Alteromonadaceae_unclassified_Alteromonadaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_OM60.NOR5..clade_OM60.NOR5..clade_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonadales_Alteromonadaceae_Halioglobus_Halioglobus_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Oceanospirillaceae_Marinospirillum_Marinospirillum_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Oceanospirillaceae_Marinospirillum_Marinospirillum_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospirillales_Alcanivoracaceae_Alcanivorax_Alcanivorax_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Serratia_Serratia_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Aeromonadales_Aeromonadaceae_Aeromonadaceae_unclassified_Aeromonadaceae_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Aeromonadales_Aeromonadaceae_Aeromonas_Aeromonas_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Psychrobacter_Psychrobacter_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Pseudomonadaceae_Cellvibrio_Cellvibrio_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Methylococcales_pLW.20_pLW.20_unclassified_pLW.20_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Methylococcales_CABC2E06_CABC2E06_unclassified_CABC2E06_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified_Gammaproteobacteria_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.2 Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Chromatiales_Ectothiorhodospiraceae_Acidiferrobacter_Acidiferrobacter_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_Legionella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.6 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.7 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.10 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.11 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.13 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.1 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Aquicella_Aquicella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.2 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.4 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.5 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.8 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.10 Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Coxiellaceae_Rickettsiella_Rickettsiella_unclassified.11 Bacteria_Proteobacteria_Gammaproteobacteria_NKB5_NKB5_unclassified_NKB5_unclassified_NKB5_unclassified.14 Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonadales_Moraxellaceae_Moraxellaceae_unclassified_Moraxellaceae_unclassified.3 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Rhodospirillaceae_unclassified_Rhodospirillaceae_unclassified.2 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.42 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.44 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.46 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.49 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.50 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.52 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.53 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.55 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.58 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Hepatincola_Candidatus.Hepatincola.porcellionum Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Rhodospirillaceae_Thalassospira_Thalassospira_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_DB1.14_DB1.14_unclassified_DB1.14_unclassified_DB1.14_unclassified.4 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Odyssella_Candidatus.Odyssella_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiales.Incertae.Sedis_Candidatus.Captivus_Candidatus.Captivus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.5 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Altererythrobacter_Altererythrobacter_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Erythrobacteraceae_unclassified_Erythrobacteraceae_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Erythrobacteraceae_Porphyrobacter_Porphyrobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.10 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_SM2D12_SM2D12_unclassified_SM2D12_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingomonadaceae_unclassified_Sphingomonadaceae_unclassified.13 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sandarakinorhabdus_Sandarakinorhabdus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sandarakinorhabdus_Sandarakinorhabdus_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Zymomonas_Zymomonas_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified_Alphaproteobacteria_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales.Incertae.Sedis_Rhizomicrobium_Rhizomicrobium_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Caulobacter_Caulobacter_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_MNG7_MNG7_unclassified_MNG7_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_MNG7_MNG7_unclassified_MNG7_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_BCf3.20_BCf3.20_unclassified_BCf3.20_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_alphaI.cluster_alphaI.cluster_unclassified_alphaI.cluster_unclassified.1 Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudolabrys_Pseudolabrys_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacteraceae_unclassified_Rhodobacteraceae_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.3 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Rhodobacter_Rhodobacter_unclassified.7 Bacteria_Proteobacteria_Alphaproteobacteria_Rhodobacterales_Rhodobacteraceae_Paracoccus_Paracoccus_unclassified Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified.2 Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_Rickettsiaceae_Rickettsia_Rickettsia_unclassified.3 Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.5 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.6 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.9 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.10 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.11 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.12 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.13 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.15 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.16 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio.bacteriovorus Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.7 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.9 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_Bdellovibrio_unclassified.11 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Sandaracinaceae_Sandaracinaceae_unclassified_Sandaracinaceae_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Sandaracinaceae_Sandaracinaceae_unclassified_Sandaracinaceae_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.3 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Myxococcales_unclassified_Myxococcales_unclassified_Myxococcales_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_Haliangiaceae_Haliangium_Haliangium_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.19 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.20 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.21 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_bacterium.Shr3_bacterium.Shr3_unclassified Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_bacterium.Shr3_bacterium.Shr3_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.23 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.26 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.28 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.29 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Bacteriovorax_Bacteriovorax_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.1 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.2 Bacteria_Proteobacteria_Deltaproteobacteria_Bdellovibrionales_Bacteriovoracaceae_Peredibacter_Peredibacter_unclassified.3 Bacteria_Deinococcus.Thermus_Deinococci_Thermales_Thermaceae_Thermus_Thermus_unclassified Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified.2 Bacteria_Deinococcus.Thermus_Deinococci_Deinococcales_Deinococcaceae_Deinococcus_Deinococcus_unclassified.3 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.1 Bacteria_TM6_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified_TM6_unclassified.6 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Dyadobacter_Dyadobacter_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Dyadobacter_Dyadobacter_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Arcicella_Arcicella_unclassified.5 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Pseudarcicella_Pseudarcicella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.5 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Leadbetterella_Leadbetterella_unclassified Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Leadbetterella_Leadbetterella_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Emticicia_Emticicia_unclassified.1 Bacteria_Bacteroidetes_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified_Bacteroidetes_unclassified.1 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophagaceae_unclassified_Cytophagaceae_unclassified.7 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagales_unclassified_Cytophagales_unclassified_Cytophagales_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.6 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.13 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophaga_Chitinophaga_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Segetibacter_Segetibacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.14 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.15 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Terrimonas_Terrimonas_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Terrimonas_Terrimonas_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.16 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.17 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.19 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.20 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Ferruginibacter_Ferruginibacter_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Chitinophagaceae_unclassified_Chitinophagaceae_unclassified.24 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Filimonas_Filimonas_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Chitinophagaceae_Filimonas_Filimonas_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Candidatus.Aquirestis_Candidatus.Aquirestis_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.10 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.11 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.12 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.16 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Saprospiraceae_Saprospiraceae_unclassified_Saprospiraceae_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.7 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.8 Bacteria_Bacteroidetes_vadinHA17_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified_vadinHA17_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.1 Bacteria_Bacteroidetes_SB.5_SB.5_unclassified_SB.5_unclassified_SB.5_unclassified_SB.5_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Solitalea_Solitalea_unclassified Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified_Sphingobacteriales_unclassified.3 Bacteria_Bacteroidetes_Cytophagia_Cytophagales_Cytophagaceae_Cytophaga_Cytophaga_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.8 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.9 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.13 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.1 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.2 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Bacteroidaceae_Bacteroides_Bacteroides_unclassified.3 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.2 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Porphyromonadaceae_Paludibacter_Paludibacter_unclassified.5 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.17 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_NS11.12.marine.group_NS11.12.marine.group_unclassified_NS11.12.marine.group_unclassified.18 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_env.OPS.17_env.OPS.17_unclassified_env.OPS.17_unclassified.9 Bacteria_Bacteroidetes_VC2.1.Bac22_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified_VC2.1.Bac22_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Epilithonimonas_Epilithonimonas_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Cloacibacterium_Cloacibacterium_unclassified Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Elizabethkingia_Elizabethkingia.meningoseptica Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Flavobacteriaceae_Weeksella_Weeksella_unclassified.1 Bacteria_Bacteroidetes_Flavobacteriia_Flavobacteriales_Cryomorphaceae_Fluviicola_Fluviicola_unclassified.3 Bacteria_Bacteroidetes_Bacteroidia_Bacteroidales_Rikenellaceae_vadinBC27.wastewater.sludge.group_vadinBC27.wastewater.sludge.group_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_KD3.93_KD3.93_unclassified_KD3.93_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_WCHB1.69_WCHB1.69_unclassified_WCHB1.69_unclassified.3 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_Mucilaginibacter_unclassified.4 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium_unclassified.1 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium_unclassified.2 Bacteria_Bacteroidetes_Sphingobacteriia_Sphingobacteriales_Sphingobacteriaceae_Sphingobacterium_Sphingobacterium.spiritivorum Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.62 Bacteria_Gemmatimonadetes_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadaceae_Gemmatimonas_Gemmatimonas_unclassified Bacteria_Nitrospirae_Nitrospira_Nitrospirales_4.29_4.29_unclassified_4.29_unclassified Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.1 Bacteria_Candidate.division.OP3_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified_Candidate.division.OP3_unclassified.3 Bacteria_NPL.UPA2_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified Bacteria_NPL.UPA2_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified_NPL.UPA2_unclassified.1 Bacteria_Spirochaetae_Spirochaetes_Spirochaetales_Spirochaetaceae_Spirochaeta_Spirochaeta_unclassified Bacteria_Proteobacteria_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified_Proteobacteria_unclassified.4 Bacteria_Proteobacteria_TA18_TA18_unclassified_TA18_unclassified_TA18_unclassified_TA18_unclassified.4 Bacteria_Proteobacteria_Deltaproteobacteria_Myxococcales_0319.6G20_0319.6G20_unclassified_0319.6G20_unclassified.30 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Simkaniaceae_unclassified_Simkaniaceae_unclassified.2 Bacteria_Acidobacteria_Acidobacteria_Subgroup.4_Unknown.Family_Blastocatella_Blastocatella_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.4_Unknown.Family_Blastocatella_Blastocatella_unclassified.1 Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_Unknown.Family_Bryobacter_Bryobacter_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.3_Unknown.Family_Bryobacter_Bryobacter_unclassified.2 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.1 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.4 Bacteria_Acidobacteria_Acidobacteria_Subgroup.6_Subgroup.6_unclassified_Subgroup.6_unclassified_Subgroup.6_unclassified.5 Bacteria_Acidobacteria_Acidobacteria_Subgroup.17_Subgroup.17_unclassified_Subgroup.17_unclassified_Subgroup.17_unclassified Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIb_Lineage.IIb_unclassified_Lineage.IIb_unclassified_Lineage.IIb_unclassified Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIb_Lineage.IIb_unclassified_Lineage.IIb_unclassified_Lineage.IIb_unclassified.1 Bacteria_Elusimicrobia_Elusimicrobia_Lineage.IIa_Lineage.IIa_unclassified_Lineage.IIa_unclassified_Lineage.IIa_unclassified.1 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.2 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiaceae_Acidimicrobiaceae_unclassified_Acidimicrobiaceae_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiaceae_Acidimicrobiaceae_unclassified_Acidimicrobiaceae_unclassified.1 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Iamiaceae_Iamia_Iamia_unclassified Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.1 Bacteria_Actinobacteria_Acidimicrobiia_Acidimicrobiales_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified_Acidimicrobiales_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_Streptomyces_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Geodermatophilaceae_Geodermatophilaceae_unclassified_Geodermatophilaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Candidatus.Planktoluna_Candidatus.Planktoluna_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.4 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_Lysinimonas_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacteriaceae_unclassified_Microbacteriaceae_unclassified.5 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Alpinimonas_Alpinimonas_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Alpinimonas_Alpinimonas_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Microbacteriaceae_Leucobacter_Leucobacter_unclassified Bacteria_Actinobacteria_Actinobacteria_Micrococcales_Sanguibacteraceae_Sanguibacter_Sanguibacter_unclassified Bacteria_Actinobacteria_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_Actinoplanes_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Propionibacteriales_Nocardioidaceae_Aeromicrobium_Aeromicrobium_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Cryptosporangiaceae_Fodinicola_Fodinicola_unclassified Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.1 Bacteria_Actinobacteria_Actinobacteria_PeM15_PeM15_unclassified_PeM15_unclassified_PeM15_unclassified.2 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.4 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_hgcI.clade_hgcI.clade_unclassified.6 Bacteria_Actinobacteria_Actinobacteria_Frankiales_Sporichthyaceae_Sporichthyaceae_unclassified_Sporichthyaceae_unclassified.3 Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_TM146_TM146_unclassified_TM146_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_Patulibacteraceae_Patulibacter_Patulibacter_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_Patulibacteraceae_Patulibacter_Patulibacter_unclassified.1 Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_480.2_480.2_unclassified_480.2_unclassified Bacteria_Actinobacteria_Thermoleophilia_Solirubrobacterales_480.2_480.2_unclassified_480.2_unclassified.1 Bacteria_Armatimonadetes_Armatimonadia_Armatimonadales_Armatimonadaceae_Armatimonas_Armatimonas_unclassified Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.23 Bacteria_WCHB1.60_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified_WCHB1.60_unclassified.24 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Rhodopirellula_Rhodopirellula_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.8 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.9 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Pirellula_Pirellula_unclassified.10 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Schlesneria_Schlesneria_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.7 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.8 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomyces_Planctomyces_unclassified.9 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Gemmata_Gemmata_unclassified.2 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Planctomycetaceae_unclassified_Planctomycetaceae_unclassified.5 Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Singulisphaera_Singulisphaera_unclassified Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales_Planctomycetaceae_Singulisphaera_Singulisphaera_unclassified.2 Bacteria_Planctomycetes_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_SM1A02_SM1A02_unclassified Bacteria_Chloroflexi_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified_Chloroflexi_unclassified Bacteria_Chloroflexi_Caldilineae_Caldilineales_Caldilineaceae_Caldilineaceae_unclassified_Caldilineaceae_unclassified Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_Anaerolineaceae_unclassified_Anaerolineaceae_unclassified Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_Roseiflexus_Roseiflexus_unclassified Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_Roseiflexus_Roseiflexus_unclassified.1 Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacterales_unclassified_Ktedonobacterales_unclassified_Ktedonobacterales_unclassified Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.2 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.5 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.6 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.9 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.11 Bacteria_Verrucomicrobia_Opitutae_Opitutales_Opitutaceae_Opitutus_Opitutus_unclassified.16 Bacteria_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified_Bacteria_unclassified.65 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.4 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.5 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.13 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.14 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.16 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified.2 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Haloferula_Haloferula_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobium_Verrucomicrobium_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.2 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.3 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.6 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.9 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Prosthecobacter_Prosthecobacter_unclassified.10 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.18 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.19 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.23 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.24 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.27 Bacteria_Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Verrucomicrobiaceae_unclassified_Verrucomicrobiaceae_unclassified.28 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_FukuN18.freshwater.group_FukuN18.freshwater.group_unclassified_FukuN18.freshwater.group_unclassified Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified.2 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_LD29_LD29_unclassified_LD29_unclassified.3 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.2 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.3 Bacteria_Verrucomicrobia_Spartobacteria_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_Chthoniobacter_unclassified.4 Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified.2 Bacteria_Chloroflexi_KD4.96_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified.1 Bacteria_Firmicutes_Bacilli_Bacillales_Staphylococcaceae_Jeotgalicoccus_Jeotgalicoccus_unclassified Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Turicibacter_Turicibacter_unclassified.1 Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Turicibacter_Turicibacter_unclassified.2 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillales_unclassified_Bacillales_unclassified_Bacillales_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Planococcaceae_unclassified_Planococcaceae_unclassified Bacteria_Firmicutes_Bacilli_Bacillales_Planococcaceae_Sporosarcina_Sporosarcina_unclassified.3 Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillaceae_unclassified_Bacillaceae_unclassified.4 Bacteria_Tenericutes_Mollicutes_NB1.n_NB1.n_unclassified_NB1.n_unclassified_NB1.n_unclassified Bacteria_Tenericutes_Mollicutes_RF9_RF9_unclassified_RF9_unclassified_RF9_unclassified Bacteria_Candidate.division.SR1_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified_Candidate.division.SR1_unclassified.25 Bacteria_Chloroflexi_KD4.96_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified_KD4.96_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Aerococcaceae_Aerococcaceae_unclassified_Aerococcaceae_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactococcus_Lactococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacterium_Carnobacterium_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Trichococcus_Trichococcus_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Trichococcus_Trichococcus_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Atopostipes_Atopostipes_unclassified.2 Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacteriaceae_unclassified_Carnobacteriaceae_unclassified Bacteria_Firmicutes_Bacilli_Lactobacillales_Carnobacteriaceae_Carnobacteriaceae_unclassified_Carnobacteriaceae_unclassified.1 Bacteria_Firmicutes_Bacilli_Lactobacillales_Aerococcaceae_Aerococcus_Aerococcus_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Syntrophomonadaceae_Syntrophomonas_Syntrophomonas_unclassified Bacteria_SHA.109_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified_SHA.109_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptococcaceae_Desulfosporosinus_Desulfosporosinus_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Chlamydiaceae_Chlamydiaceae_unclassified_Chlamydiaceae_unclassified Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Chlamydiaceae_Chlamydiaceae_unclassified_Chlamydiaceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptococcaceae_Desulfosporosinus_Desulfosporosinus_unclassified.1 Bacteria_Firmicutes_Clostridia_Thermoanaerobacterales_Family.III_Thermoanaerobacterium_Thermoanaerobacterium_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Family.XIII_unclassified_Family.XIII_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Mogibacterium_Mogibacterium_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Family.XIII_Mogibacterium_Mogibacterium_unclassified.1 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia.porcellionis.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.1 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.4 Bacteria_Chlamydiae_Chlamydiae_Chlamydiales_Simkaniaceae_Candidatus.Rhabdochlamydia_Candidatus.Rhabdochlamydia_unclassified.5 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospiraceae_unclassified_Lachnospiraceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Subdoligranulum_Subdoligranulum_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Subdoligranulum_Subdoligranulum_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Cellulosilyticum_Cellulosilyticum_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Cellulosilyticum_Cellulosilyticum_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Incertae.Sedis_Incertae.Sedis_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Peptostreptococcaceae_Peptostreptococcaceae_unclassified_Peptostreptococcaceae_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcus_Ruminococcus_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcus_Ruminococcus_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified.1 Bacteria_Firmicutes_Clostridia_Clostridiales_Clostridiaceae.1_Clostridiaceae.1_unclassified_Clostridiaceae.1_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.3 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.5 Bacteria_Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Ruminococcaceae_unclassified_Ruminococcaceae_unclassified.6 Bacteria_Firmicutes_Erysipelotrichia_Erysipelotrichales_Erysipelotrichaceae_Erysipelotrichaceae_unclassified_Erysipelotrichaceae_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Pseudobutyrivibrio_Pseudobutyrivibrio_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Roseburia_Roseburia_unclassified Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Lachnospiraceae_unclassified_Lachnospiraceae_unclassified.2 Bacteria_Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Blautia_Blautia_unclassified Bacteria_Cyanobacteria_ML635J.21_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified_ML635J.21_unclassified.3
037_25_10_17_KIT1 0 0 0 12 0 0 0 0 6 1 0 0 0 0 6 0 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 5 0 1 6 0 0 0 0 1 0 0 0 0 0 0 0 0 7 0 6 6 0 0 0 0 0 9 0 0 0 7 0 0 0 1 0 0 0 0 0 0 0 11 0 0 0 3 0 9 0 0 0 6 0 0 0 3 14 5 0 0 5 3 4 0 0 0 6 0 0 0 0 9 0 0 3 7 0 0 9 0 0 0 0 2 0 0 0 0 9 0 0 0 0 3 1 0 0 0 0 0 1 0 0 5 0 3 0 0 0 6 0 0 0 1 0 0 0 0 5 7 0 0 1 0 0 0 0 0 0 8 5 0 0 9 5 1 0 0 5 4 0 0 0 5 2 13 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 4 1 0 19 0 0 0 6 3 0 0 0 3 4 0 3 0 0 0 0 0 0 0 0 0 0 2 0 0 15 0 0 0 0 2 0 11 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 7 0 0 3 0 0 5 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 0 0 0 9 0 0 2 4 0 0 0 0 2 0 4 0 0 0 0 0 0 0 5 0 0 0 1 0 0 0 3 0 0 0 4 0 0 7 6 0 0 0 0 0 0 0 15 0 0 16 0 0 0 0 0 0 2 0 2 0 4 0 0 4 0 0 0 5 0 0 0 0 0 0 0 7 11 0 8 2 0 4 0 0 0 0 0 5 0 2 0 0 3 0 0 0 0 3 0 1 0 0 0 2 0 0 0 0 4 0 8 4 0 0 7 14 0 0 4 0 3 1 0 0 3 0 7 0 0 0 0 5 13 0 0 0 0 6 0 0 0 0 0 5 0 2 0 0 0 0 0 0 0 7 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 6 10 0 0 10 0 0 0 9 0 0 0 0 27 2 0 0 0 0 0 0 1 0 4 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 4 0 0 0 0 0 0 0 1 0 0 0 0 6 0 0 0 0 1 0 0 3 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 5 0 0 0 0 0 0 0 13 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 4 0 0 8 0 0 0 0 3 15 0 0 0 0 3 0 0 4 0 2 2 0 0 0 0
037_25_10_17_KIT2 0 0 0 3 6 0 0 0 0 0 0 0 0 5 0 0 0 0 0 3 0 0 3 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 13 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 10 0 11 0 0 1 0 4 19 0 0 3 0 0 0 0 0 0 3 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 10 0 0 0 0 0 0 7 0 0 0 2 0 0 7 0 0 3 0 0 0 0 14 3 0 0 0 11 0 0 0 0 1 0 3 0 0 0 10 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 3 0 0 0 21 0 0 0 5 0 0 0 0 5 0 0 13 0 1 11 0 0 0 0 0 0 0 0 0 3 0 0 0 12 0 4 3 3 0 0 3 1 0 0 0 0 0 2 0 23 4 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 3 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 5 1 0 1 2 0 0 0 0 0 3 1 0 0 2 0 4 5 0 0 0 3 0 9 0 8 0 0 0 0 0 4 0 0 0 13 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 6 0 0 0 0 0 0 0 4 0 3 0 0 0 0 0 0 0 0 0 2 33 0 4 0 0 0 0 0 12 10 4 3 0 0 0 0 0 0 0 0 0 0 3 2 0 2 0 0 0 0 0 0 4 0 0 0 5 0 0 0 0 0 9 0 12 1 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 5 13 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 5 0 0 0 0 0 0 0 11 0 0 0 0 2 0 6 0 0 0 0 0 0 8 8 0 0 3 1 87 9 0 0 0 0 0 10 26 0 0 0 4 9 0 0 0 0 1 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 10 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 2 19 0 0 4 0 1 3 0 0 0 0 11 0 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
049_16_11_16_KIT1 0 0 0 0 0 0 0 0 0 0 14 0 7 0 0 0 0 0 1 0 0 0 0 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 6 0 0 0 0 2 0 2 0 2 0 0 0 9 0 0 0 0 7 4 0 0 0 0 0 5 4 3 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 9 0 0 0 14 0 0 0 0 0 10 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 7 0 0 1 5 0 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 21 0 0 0 1 4 5 2 0 0 0 4 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 4 0 0 7 0 0 0 0 0 5 0 0 0 3 0 0 0 3 0 5 0 3 0 0 0 2 0 0 8 0 0 2 0 0 0 4 5 0 4 0 0 0 5 5 0 0 0 0 0 0 0 0 0 4 0 0 3 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 5 0 0 0 0 0 3 9 0 0 0 2 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 6 11 0 1 10 0 0 0 5 0 0 5 2 0 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 6 15 0 0 7 0 8 0 0 0 0 1 0 0 19 0 1 0 3 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 5 0 0 0 17 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 6 0 0 0 0 4 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 2 0 4 0 0 0 2 0 0 15 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0 0 0 5 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 15 31 0 0 0 0 0 0 0 0 0 1 8 0 4 1 0 5 0 0 0 0 5 0 0 10 1 5 0 0 2 0 3 0 0 1 0 0 0 0 0 0 0 0 27 6 6 0 9 0 0 0 0 0 0 0 0 0 0 0 5 0 0 6 1 0 8 0 0 0 0 0 3 0 14 8 0 0 0 0 0 0 4 0 0 2 0 0 1 0
049_16_11_16_KIT2 0 0 8 0 0 0 10 0 0 1 0 0 0 0 19 0 0 2 1 11 4 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 3 0 0 1 3 0 0 2 1 5 2 0 0 3 0 10 4 0 9 2 8 10 0 0 0 7 0 0 2 0 0 0 10 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 3 0 0 3 8 0 0 0 0 0 0 14 0 0 1 5 0 0 6 0 0 2 1 0 0 0 1 7 0 4 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 4 0 0 0 0 0 0 2 1 2 10 0 16 0 0 3 0 0 0 0 1 1 6 0 0 7 0 0 0 0 0 0 3 0 0 0 0 0 0 0 5 0 15 0 3 1 2 0 0 0 0 0 0 0 0 11 2 0 0 4 11 0 0 5 5 0 0 0 0 0 1 0 0 0 10 0 0 0 3 0 4 0 6 0 6 0 8 0 8 0 0 0 0 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 16 0 0 5 3 0 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 3 0 0 0 0 3 0 0 0 11 0 0 0 0 5 2 0 0 0 0 0 0 0 0 3 0 0 0 2 0 0 0 7 0 3 0 5 0 0 0 0 0 0 0 0 0 0 2 0 0 9 0 6 0 0 0 0 0 6 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 30 6 3 0 1 1 0 0 0 0 0 0 0 0 2 2 0 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 1 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 6 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 3 0 20 0 0 0 0 0 0 0 4 0 0 0 61 1 0 8 0 0 1 0 0 7 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 11 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 7 0 8 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 2 7 0 2 0 5 0 0 0 0 0 0 2 0 2 1 0 2 0 0 0 0 0 10 0 0 0 0 0 0 0 52 7 0 0 0 0 0 0 3 0 7 0 2 3 2 0
050_19_06_15_KIT1 0 0 1 4 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 3 9 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 0 0 2 0 0 0 5 1 0 0 0 0 5 0 9 0 0 0 0 15 4 0 4 0 0 0 0 0 2 1 5 0 0 0 0 6 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 1 0 2 0 3 0 0 0 0 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 7 0 6 0 0 0 8 0 0 0 4 0 5 11 0 0 2 0 2 0 1 1 0 0 0 3 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 14 0 2 0 0 0 0 0 0 0 0 0 11 5 2 0 0 0 0 0 0 3 0 0 0 7 0 3 0 0 0 0 0 0 0 1 7 0 0 0 3 0 0 0 0 2 0 0 0 4 3 0 3 4 0 0 0 0 6 0 0 0 0 0 8 0 4 0 8 0 0 0 4 0 9 7 0 6 6 0 0 0 3 2 0 0 0 0 0 0 0 3 8 0 0 1 0 0 0 0 10 6 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 6 0 0 7 0 0 0 0 2 2 3 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 0 0 0 0 0 0 4 0 0 0 3 0 0 2 1 0 0 0 5 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 5 4 0 3 0 2 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 6 0 0 0 2 0 0 0 0 0 5 0 5 0 0 0 0 5 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 8 0 8 0 0 0 3 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 4 0 0 0 0 0 3 0 0 0 0 0 0 0 7 0 0 0 0 4 0 3 0 1 0 2 63 0 0 0 0 0 0 0 8 0 0 0 0 2 0 0 0 0 1 0 0 0 0 4 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 0 0 17 0 0 0 1 0 0 0 0 0 5 0 3 2 0 0 2 0 4 0 3 0 2 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 1 0 0 0 0 8 0 0 4 0 2 3 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0
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  1. Filtering loss value (FL) - A numeric value between 0 and 1 indicating the contribution of the removed counts to the overall covariance. High values would be a sign of potential over-filtering.
pipeline_2_results$filtering_loss
## [1] 0.8779134

  1. Contaminant ID (contaminant_id) - Dataframe with features (p) by removal steps and boolean value indicating TRUE if tagged as contaminant in that step, FALSE otherwise.

  2. Removed (removed) - Character vector of all samples tagged as contaminants and removed from the decontaminated count matrix

Optionally, users can input their results list object from pipeline2 into the visualize_pipeline function. If interactive is set to true, the resulting visualization is interactive.

visualize_pipeline(pipeline_2_results,
                   interactive = FALSE)
## Scale for fill is already present.
## Adding another scale for fill, which will replace the existing scale.

Filtering Loss (FL)

First introduced for use in a filtering method PERfect by Smirnova, Huzurbazar, and Jafari (2019), the filtering loss (FL) statistic is implemented in the micRoclean package to quantify the impact due to filtering features out in the above pipelines. The filtering loss value is between zero and one, indicating low to high contribution respectively from the removed reads to the total convariance structure. As the filtering loss value gets closer to one, users should be concerned about potential overfiltering.

Filtering loss for removal of reads \(J\) is defined as

\[FL(J) = 1 - \frac{\|Y^T Y\|_F^2}{\|X^TX\|_F^2}\]

where the filtering loss represents a ratio of the unfiltered (\(X\)) and filtered (\(Y\)) covariance matrices.

In our example for pipeline1, we see that the filtering loss is:

paste0('Filtering loss: ', round(pipeline_1_results$filtering_loss, 4))
## [1] "Filtering loss: 0.2199"

Indicating that there is a low contribution for the removed counts. We do not see evidence of overfiltering using this method.

For more detailed information, users are suggested to read the methods section 2.1 of the Smirnova, Huzurbazar, and Jafari (2109) publication.

References

Austin, G. I., Park, H., Meydan, Y., Seeram, D., Sezin, T., Lou, Y. C., Firek, B. A., Morowitz, M. J., Banfield, J. F., Christiano, A. M., Pe’er, I., Uhlemann, A. C., Shenhav, L., & Korem, T. (2023). Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data. Nature biotechnology, 41(12), 1820–1828. https://doi.org/10.1038/s41587-023-01696-w

Davis, N.M., Proctor, D.M., Holmes, S.P. et al. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome 6, 226 (2018). https://doi.org/10.1186/s40168-018-0605-2

Eisenhofer, R., Minich, J. J., Marotz, C., Cooper, A., Knight, R., & Weyrich, L. S. (2019). Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. Trends in microbiology, 27(2), 105–117. https://doi.org/10.1016/j.tim.2018.11.003

Smirnova, E., Huzurbazar, S., & Jafari, F. (2019). PERFect: PERmutation Filtering test for microbiome data. Biostatistics (Oxford, England), 20(4), 615–631. https://doi.org/10.1093/biostatistics/kxy020